| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is flbA [H]
Identifier: 192290913
GI number: 192290913
Start: 2730460
End: 2732286
Strand: Reverse
Name: flbA [H]
Synonym: Rpal_2530
Alternate gene names: 192290913
Gene position: 2732286-2730460 (Counterclockwise)
Preceding gene: 192290914
Following gene: 192290912
Centisome position: 47.57
GC content: 69.29
Gene sequence:
>1827_bases ATGACGGGGATGAATCGTAACGAGCGGAGGAAGCAGGCGAAGCTGGTCCCCAAGGGCAGCGGCCCGCCCCCGCAACCCAA TGCCGGACAGCAATGGTTTGCGGCCGCGGTTCAGCACCATCAGCAGGGCCGGCTGGCGGAGGCCGAGGCGCTGTACCGGC AGGTGCTGAATGTGGATGCGCGCCATGCCGACGCCTGGCATCTGCTCGGCGTGCTCGCGCTGCAGGTCGGGCGCAACGAT ATCGCGCTGGAGATGATCGGCAAGGCGATCTCGCTCAACCGGATGGTCGCCGCCTATCACGGCAATCGCGGGCTGGCGCT GGACGGCCTCGGGCGCCCCGCGGAGGCGCTGGCGTCTTACGACGCGGCGCTGGCGATCGAGCCGCGCGTTGCCGAGGCGC ACTGCAATCGCGCCGCCGCGCTGATCACGCTCGGCCGGCCCGAGGACGCCCTGCGCGCGGCCGAGGCGGCGCTGCGGCTG CAGCCGGATGACGTCAACGCGAAGATCAATCGCGGCAACGCGCTCCGCGATCTCGGCCGGCTGGACGAGGCGCTATCCGC CTATGAGACCGTGTTACGAACGGCCCCCGGCAATGCGCTGGCGCAGACCAACCGCGGCATCGTCCTCAAGACGCTGGGGC GGCTCGACGAGGCCCTCGCCTGCTACGACGCCGCGCTGCAAGCCGATCCCAACCTCGCCGAAGCGCACACCAATCGCGGC GTCACGCTGAAGAACCTGTTGCGGCTCGACGAAGCCCTGACCGCCTGCCAGAAGGCGATTCAGCTGCAGCCGCGCAGCGC CGATGCCCATTACAATCTGGCCACCGTATTGCACGATCAGTGCCGGCTCGACGACGCACTCGCCAGCTACGATCAGGCGC TGGCGCTGCGGCCCGACTTCGCCATGGCGCGCTGGAATCGCGCCTGTATCCTGCTGTCGACGGGCCGTTTCCAGGAAGGC TGGCGCGAACACGAATGGCGGTCGCACAGGGAAAGCGCGCCGCGGCAATTTCCGCAGCCGCAGTGGAGTGGCGAAGCGCT CGCCGGCCGAACCCTGCTGCTGCATGCCGAGCAGGGTCTCGGCGACACGCTGCAATTCCTGCGCTACGTACCCAAGGTTG CGGCGACGGGCGCGCGGATCATCCTGGCGGTGCCGGGACCGCTGCACCGCCTCGTCGCGCAGTCATTCCCCGACGTTGTC GTCGTCGACGATGCCGGCGCCCTGCCCGCGTTCGACTTGCACTGCCCGCTGCTGTCGCTGCCGCTGTGCTTCGGCACCAC GCTCGAGACCATTCCGGCGGACGTCCCGTATCTGTCCGCCGATCCCGCCGCGGTGGCGCGCTGGCGCGAGCGCCTCAGCG CAGGATCGCGTCCCAAGGTCGGTCTGGTCTGGGCCGGCAATCCGCGACACGCCAACGACCGCAACCGCTCGCTCCCGTTC GCGCAATTGGCGCCCCTGTTCAACCTTGCTGGCATCGAGTGGATTTCATTGCAGGTCGGCGACCGCCGCACCGATCTGGC TCAGGCGCCAGCGGGCCTCCTTCGCGATGTCGCGGATGATCTGACCGACTTCGCCGAGACCGCCGCCGCGGTGAGTGCGC TCGACCTCATCGTCTCCGTCGACACCGCAGTGGCCCACCTCGCCGCCGCGCTGGCGCGACCGGTGATCATGGCGATCCCG TTCGTGCCCGATTGGCGATGGCTGCTGGCCCGCGAGGACAGCCCCTGGTATCCGACCGTCCGCCTGGTGCGCCAAACCCG GCCGCAGGACTGGGACGGCGTCGTGACCAAACTCGCCGCAACGCTGACGCGCTTCATCGAGACATGA
Upstream 100 bases:
>100_bases AGTTCGTGTTTAGAGCTGAGCTGATGTGTGTGTAGCAAGGTGGATTCGCGTTGCTTCGGGTCGGCCACGACCTGCTGCTG CCACGATGGAATGCTCGCCG
Downstream 100 bases:
>100_bases CCGGCGGCACCCGTTTCACCCGCATCCTGCGCAACCCGGCACGGCCGAAACCGCCGACCGTGGAGATGATCGAACGGATG AGCGCGGAGGCCGAGCTGGG
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 608; Mature: 607
Protein sequence:
>608_residues MTGMNRNERRKQAKLVPKGSGPPPQPNAGQQWFAAAVQHHQQGRLAEAEALYRQVLNVDARHADAWHLLGVLALQVGRND IALEMIGKAISLNRMVAAYHGNRGLALDGLGRPAEALASYDAALAIEPRVAEAHCNRAAALITLGRPEDALRAAEAALRL QPDDVNAKINRGNALRDLGRLDEALSAYETVLRTAPGNALAQTNRGIVLKTLGRLDEALACYDAALQADPNLAEAHTNRG VTLKNLLRLDEALTACQKAIQLQPRSADAHYNLATVLHDQCRLDDALASYDQALALRPDFAMARWNRACILLSTGRFQEG WREHEWRSHRESAPRQFPQPQWSGEALAGRTLLLHAEQGLGDTLQFLRYVPKVAATGARIILAVPGPLHRLVAQSFPDVV VVDDAGALPAFDLHCPLLSLPLCFGTTLETIPADVPYLSADPAAVARWRERLSAGSRPKVGLVWAGNPRHANDRNRSLPF AQLAPLFNLAGIEWISLQVGDRRTDLAQAPAGLLRDVADDLTDFAETAAAVSALDLIVSVDTAVAHLAAALARPVIMAIP FVPDWRWLLAREDSPWYPTVRLVRQTRPQDWDGVVTKLAATLTRFIET
Sequences:
>Translated_608_residues MTGMNRNERRKQAKLVPKGSGPPPQPNAGQQWFAAAVQHHQQGRLAEAEALYRQVLNVDARHADAWHLLGVLALQVGRND IALEMIGKAISLNRMVAAYHGNRGLALDGLGRPAEALASYDAALAIEPRVAEAHCNRAAALITLGRPEDALRAAEAALRL QPDDVNAKINRGNALRDLGRLDEALSAYETVLRTAPGNALAQTNRGIVLKTLGRLDEALACYDAALQADPNLAEAHTNRG VTLKNLLRLDEALTACQKAIQLQPRSADAHYNLATVLHDQCRLDDALASYDQALALRPDFAMARWNRACILLSTGRFQEG WREHEWRSHRESAPRQFPQPQWSGEALAGRTLLLHAEQGLGDTLQFLRYVPKVAATGARIILAVPGPLHRLVAQSFPDVV VVDDAGALPAFDLHCPLLSLPLCFGTTLETIPADVPYLSADPAAVARWRERLSAGSRPKVGLVWAGNPRHANDRNRSLPF AQLAPLFNLAGIEWISLQVGDRRTDLAQAPAGLLRDVADDLTDFAETAAAVSALDLIVSVDTAVAHLAAALARPVIMAIP FVPDWRWLLAREDSPWYPTVRLVRQTRPQDWDGVVTKLAATLTRFIET >Mature_607_residues TGMNRNERRKQAKLVPKGSGPPPQPNAGQQWFAAAVQHHQQGRLAEAEALYRQVLNVDARHADAWHLLGVLALQVGRNDI ALEMIGKAISLNRMVAAYHGNRGLALDGLGRPAEALASYDAALAIEPRVAEAHCNRAAALITLGRPEDALRAAEAALRLQ PDDVNAKINRGNALRDLGRLDEALSAYETVLRTAPGNALAQTNRGIVLKTLGRLDEALACYDAALQADPNLAEAHTNRGV TLKNLLRLDEALTACQKAIQLQPRSADAHYNLATVLHDQCRLDDALASYDQALALRPDFAMARWNRACILLSTGRFQEGW REHEWRSHRESAPRQFPQPQWSGEALAGRTLLLHAEQGLGDTLQFLRYVPKVAATGARIILAVPGPLHRLVAQSFPDVVV VDDAGALPAFDLHCPLLSLPLCFGTTLETIPADVPYLSADPAAVARWRERLSAGSRPKVGLVWAGNPRHANDRNRSLPFA QLAPLFNLAGIEWISLQVGDRRTDLAQAPAGLLRDVADDLTDFAETAAAVSALDLIVSVDTAVAHLAAALARPVIMAIPF VPDWRWLLAREDSPWYPTVRLVRQTRPQDWDGVVTKLAATLTRFIET
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 4 TPR repeats [H]
Homologues:
Organism=Homo sapiens, GI32307148, Length=287, Percent_Identity=33.4494773519164, Blast_Score=139, Evalue=1e-32, Organism=Homo sapiens, GI32307150, Length=287, Percent_Identity=33.4494773519164, Blast_Score=138, Evalue=1e-32, Organism=Homo sapiens, GI310110582, Length=253, Percent_Identity=24.1106719367589, Blast_Score=79, Evalue=9e-15, Organism=Homo sapiens, GI310131789, Length=253, Percent_Identity=24.1106719367589, Blast_Score=79, Evalue=9e-15, Organism=Homo sapiens, GI310123097, Length=253, Percent_Identity=24.1106719367589, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI301336134, Length=199, Percent_Identity=30.1507537688442, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI83415184, Length=199, Percent_Identity=30.1507537688442, Blast_Score=75, Evalue=3e-13, Organism=Homo sapiens, GI224809432, Length=214, Percent_Identity=28.9719626168224, Blast_Score=74, Evalue=5e-13, Organism=Homo sapiens, GI22749211, Length=293, Percent_Identity=27.6450511945392, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI118766330, Length=200, Percent_Identity=29, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI118766328, Length=200, Percent_Identity=29, Blast_Score=71, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115532690, Length=279, Percent_Identity=31.5412186379928, Blast_Score=126, Evalue=4e-29, Organism=Caenorhabditis elegans, GI115532692, Length=284, Percent_Identity=30.2816901408451, Blast_Score=125, Evalue=5e-29, Organism=Saccharomyces cerevisiae, GI6319387, Length=174, Percent_Identity=27.0114942528736, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI17647755, Length=303, Percent_Identity=32.6732673267327, Blast_Score=130, Evalue=2e-30, Organism=Drosophila melanogaster, GI24585827, Length=303, Percent_Identity=32.6732673267327, Blast_Score=130, Evalue=2e-30, Organism=Drosophila melanogaster, GI24585829, Length=303, Percent_Identity=32.6732673267327, Blast_Score=130, Evalue=2e-30, Organism=Drosophila melanogaster, GI24647123, Length=201, Percent_Identity=31.8407960199005, Blast_Score=86, Evalue=9e-17, Organism=Drosophila melanogaster, GI24656717, Length=211, Percent_Identity=28.436018957346, Blast_Score=79, Evalue=8e-15, Organism=Drosophila melanogaster, GI18110006, Length=211, Percent_Identity=28.436018957346, Blast_Score=79, Evalue=8e-15, Organism=Drosophila melanogaster, GI161076610, Length=357, Percent_Identity=25.2100840336134, Blast_Score=69, Evalue=8e-12, Organism=Drosophila melanogaster, GI19920486, Length=357, Percent_Identity=25.2100840336134, Blast_Score=69, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66297; Mature: 66166
Theoretical pI: Translated: 7.44; Mature: 7.44
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGMNRNERRKQAKLVPKGSGPPPQPNAGQQWFAAAVQHHQQGRLAEAEALYRQVLNVDA CCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC RHADAWHLLGVLALQVGRNDIALEMIGKAISLNRMVAAYHGNRGLALDGLGRPAEALASY CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEEECCCCCEECCCCCCHHHHHCC DAALAIEPRVAEAHCNRAAALITLGRPEDALRAAEAALRLQPDDVNAKINRGNALRDLGR CCEEEECCCHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHH LDEALSAYETVLRTAPGNALAQTNRGIVLKTLGRLDEALACYDAALQADPNLAEAHTNRG HHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC VTLKNLLRLDEALTACQKAIQLQPRSADAHYNLATVLHDQCRLDDALASYDQALALRPDF CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCH AMARWNRACILLSTGRFQEGWREHEWRSHRESAPRQFPQPQWSGEALAGRTLLLHAEQGL HHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCC GDTLQFLRYVPKVAATGARIILAVPGPLHRLVAQSFPDVVVVDDAGALPAFDLHCPLLSL CHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCCCCEECCCHHHHH PLCFGTTLETIPADVPYLSADPAAVARWRERLSAGSRPKVGLVWAGNPRHANDRNRSLPF HHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCH AQLAPLFNLAGIEWISLQVGDRRTDLAQAPAGLLRDVADDLTDFAETAAAVSALDLIVSV HHHHHHHHHCCCEEEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DTAVAHLAAALARPVIMAIPFVPDWRWLLAREDSPWYPTVRLVRQTRPQDWDGVVTKLAA HHHHHHHHHHHHCCHHEEECCCCCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHH TLTRFIET HHHHHHCC >Mature Secondary Structure TGMNRNERRKQAKLVPKGSGPPPQPNAGQQWFAAAVQHHQQGRLAEAEALYRQVLNVDA CCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC RHADAWHLLGVLALQVGRNDIALEMIGKAISLNRMVAAYHGNRGLALDGLGRPAEALASY CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEEECCCCCEECCCCCCHHHHHCC DAALAIEPRVAEAHCNRAAALITLGRPEDALRAAEAALRLQPDDVNAKINRGNALRDLGR CCEEEECCCHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHH LDEALSAYETVLRTAPGNALAQTNRGIVLKTLGRLDEALACYDAALQADPNLAEAHTNRG HHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC VTLKNLLRLDEALTACQKAIQLQPRSADAHYNLATVLHDQCRLDDALASYDQALALRPDF CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCH AMARWNRACILLSTGRFQEGWREHEWRSHRESAPRQFPQPQWSGEALAGRTLLLHAEQGL HHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCC GDTLQFLRYVPKVAATGARIILAVPGPLHRLVAQSFPDVVVVDDAGALPAFDLHCPLLSL CHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCCCCEECCCHHHHH PLCFGTTLETIPADVPYLSADPAAVARWRERLSAGSRPKVGLVWAGNPRHANDRNRSLPF HHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCH AQLAPLFNLAGIEWISLQVGDRRTDLAQAPAGLLRDVADDLTDFAETAAAVSALDLIVSV HHHHHHHHHCCCEEEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DTAVAHLAAALARPVIMAIPFVPDWRWLLAREDSPWYPTVRLVRQTRPQDWDGVVTKLAA HHHHHHHHHHHHCCHHEEECCCCCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHH TLTRFIET HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9748431; 11259647; 1699845 [H]