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The map label for this gene is 192290704

Identifier: 192290704

GI number: 192290704

Start: 2503568

End: 2504509

Strand: Reverse

Name: 192290704

Synonym: Rpal_2316

Alternate gene names: NA

Gene position: 2504509-2503568 (Counterclockwise)

Preceding gene: 192290712

Following gene: 192290699

Centisome position: 43.6

GC content: 66.56

Gene sequence:

>942_bases
ATGGCGAAGCGTGCGCGTGTTGTCCGAATACATGCAGAGGGGGCCGTACCTGCCCCGATGCCTGGATTTGTCCAGCCCCA
GCTTGCCACCCTGCGGACACGTCCACCGTCCGGTGCCGGATGGATCCACGAGATCAAGTTGGACGGATACCGCGGCCAGG
CGCACGTCGGCCCACAGGGGACCCGCATTTACACCCGCGGAGGTCATGACTGGTCGAAGATGTTCGCCCCGCTGGTCGCC
GCCCTGTCGGATGCCGCCGTCGACGAGGCGGTGATCGACGGCGAGATCGTGGTGGTCGTTGATGAGCGGACGGATTTCGG
AGCCCTGCAGGCCGACCTTGCGGCAAGACGTGCCGACCGCATGCTGTTCTACGCATTCGACCTGCTGCACCTCGACGGCT
ACGACCTCGGGCCGGTCCCCCTGACCGAGCGCAAGCGGCTTCTCAAGGGCCTCTTCGACCGTGGCCTGGAGCCACCGGTC
GTCTACAGCGACAGCATGGACGACGGCGAAGCAATGTTTGATGGGGCTGGGCGCCTCGGGTGGGAAGGCATCGTCAGCAA
GCGCGCCGACGCGCCCTATCGCAGCGGCGACCGGAGCTTGGACTGGCAGAAGATCAAGACCTCAAAGCGCGAGCATCTCG
TCATCGTCGGCTACGTGCCGGCGACAGGCGGCATCGCCGCGCTGCACGTCGCCAGGCGCGACGGCGACAGCTTGGTCTAC
GCAGGAAAAGTCGGCACCGGGTTCTCGGTCAAGGTAGGCGCGGATCTGCGCCGGCGACTGGCGGAGATCGAGACAGCAGC
ACCGCCAATCGCCAAGCCGCCACCACGGCACCGGCCGCGGTGGGTCCGGCCGGTGATGAGCGCCGATGTCGAATACCGCG
ACATCACCGCCAGCGGTCATCTGCGCCACGCATCTTTCAAGGGGCTCGCGAAGGCTCCGTAA

Upstream 100 bases:

>100_bases
TGACGATCGCTGGTTCCATCTACAACCCCGGTTCCACGTCAACCGGCGGCTTTCCACCCGGGGATTCGGATTCTGTGGAA
ATCGCACTATCTGCTTGGTG

Downstream 100 bases:

>100_bases
TAGGAAACCACCAGTTTTTGACAGTTTCCTATTACGACGCAATGGCCGACGGCAGATCCAGCCTGGCCACCGCCTCCGCG
GCCGCGGTGCGCAGGTGCGG

Product: DNA polymerase LigD, ligase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MAKRARVVRIHAEGAVPAPMPGFVQPQLATLRTRPPSGAGWIHEIKLDGYRGQAHVGPQGTRIYTRGGHDWSKMFAPLVA
ALSDAAVDEAVIDGEIVVVVDERTDFGALQADLAARRADRMLFYAFDLLHLDGYDLGPVPLTERKRLLKGLFDRGLEPPV
VYSDSMDDGEAMFDGAGRLGWEGIVSKRADAPYRSGDRSLDWQKIKTSKREHLVIVGYVPATGGIAALHVARRDGDSLVY
AGKVGTGFSVKVGADLRRRLAEIETAAPPIAKPPPRHRPRWVRPVMSADVEYRDITASGHLRHASFKGLAKAP

Sequences:

>Translated_313_residues
MAKRARVVRIHAEGAVPAPMPGFVQPQLATLRTRPPSGAGWIHEIKLDGYRGQAHVGPQGTRIYTRGGHDWSKMFAPLVA
ALSDAAVDEAVIDGEIVVVVDERTDFGALQADLAARRADRMLFYAFDLLHLDGYDLGPVPLTERKRLLKGLFDRGLEPPV
VYSDSMDDGEAMFDGAGRLGWEGIVSKRADAPYRSGDRSLDWQKIKTSKREHLVIVGYVPATGGIAALHVARRDGDSLVY
AGKVGTGFSVKVGADLRRRLAEIETAAPPIAKPPPRHRPRWVRPVMSADVEYRDITASGHLRHASFKGLAKAP
>Mature_312_residues
AKRARVVRIHAEGAVPAPMPGFVQPQLATLRTRPPSGAGWIHEIKLDGYRGQAHVGPQGTRIYTRGGHDWSKMFAPLVAA
LSDAAVDEAVIDGEIVVVVDERTDFGALQADLAARRADRMLFYAFDLLHLDGYDLGPVPLTERKRLLKGLFDRGLEPPVV
YSDSMDDGEAMFDGAGRLGWEGIVSKRADAPYRSGDRSLDWQKIKTSKREHLVIVGYVPATGGIAALHVARRDGDSLVYA
GKVGTGFSVKVGADLRRRLAEIETAAPPIAKPPPRHRPRWVRPVMSADVEYRDITASGHLRHASFKGLAKAP

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 34148; Mature: 34017

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRARVVRIHAEGAVPAPMPGFVQPQLATLRTRPPSGAGWIHEIKLDGYRGQAHVGPQG
CCCCCEEEEEEECCCCCCCCCCCCCCHHHHEECCCCCCCCCEEEEEECCCCCCEEECCCC
TRIYTRGGHDWSKMFAPLVAALSDAAVDEAVIDGEIVVVVDERTDFGALQADLAARRADR
CEEEECCCCCHHHHHHHHHHHHHHHHHHHEEECCEEEEEEECCCCCCHHHHHHHHHHHHH
MLFYAFDLLHLDGYDLGPVPLTERKRLLKGLFDRGLEPPVVYSDSMDDGEAMFDGAGRLG
EEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHCCCCCCCC
WEGIVSKRADAPYRSGDRSLDWQKIKTSKREHLVIVGYVPATGGIAALHVARRDGDSLVY
HHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCCCEEEEEEEECCCCCEEE
AGKVGTGFSVKVGADLRRRLAEIETAAPPIAKPPPRHRPRWVRPVMSADVEYRDITASGH
EECCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCC
LRHASFKGLAKAP
EEECCCCCCCCCC
>Mature Secondary Structure 
AKRARVVRIHAEGAVPAPMPGFVQPQLATLRTRPPSGAGWIHEIKLDGYRGQAHVGPQG
CCCCEEEEEEECCCCCCCCCCCCCCHHHHEECCCCCCCCCEEEEEECCCCCCEEECCCC
TRIYTRGGHDWSKMFAPLVAALSDAAVDEAVIDGEIVVVVDERTDFGALQADLAARRADR
CEEEECCCCCHHHHHHHHHHHHHHHHHHHEEECCEEEEEEECCCCCCHHHHHHHHHHHHH
MLFYAFDLLHLDGYDLGPVPLTERKRLLKGLFDRGLEPPVVYSDSMDDGEAMFDGAGRLG
EEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHCCCCCCCC
WEGIVSKRADAPYRSGDRSLDWQKIKTSKREHLVIVGYVPATGGIAALHVARRDGDSLVY
HHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCCCEEEEEEEECCCCCEEE
AGKVGTGFSVKVGADLRRRLAEIETAAPPIAKPPPRHRPRWVRPVMSADVEYRDITASGH
EECCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCC
LRHASFKGLAKAP
EEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]