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The map label for this gene is nodB [H]

Identifier: 192290460

GI number: 192290460

Start: 2238927

End: 2239997

Strand: Reverse

Name: nodB [H]

Synonym: Rpal_2067

Alternate gene names: 192290460

Gene position: 2239997-2238927 (Counterclockwise)

Preceding gene: 192290461

Following gene: 192290459

Centisome position: 39.0

GC content: 66.95

Gene sequence:

>1071_bases
ATGCGTAAATTTGCGGTGCTGGCAGCCGGCTGTAGCACGCTGGCTGTTCTGGTCGGGCTCGGCGCCGGCCGCGCGTGGTT
CACGCTCACCCCCTCCAAGATCGACGCCGCCCGCGCTCCGTCCGCTTCGGAAGAAATCACCACCGGCACGATCGCTGCGC
GCTGGCCGACGCCCGGCGGTGCGCCTCCGCGCGCCGCGCAGAGCCCCGCTCCGAACATCCAGCCGGCCCGCGCCACAGCC
GACCCCGCGCTCAACGCCAAGCCTGCTGCGCTGCCGGCCCCGGCGCCGGTGCGGCAGACCTGCAGCAATCCGAACGCGCT
CGGCATTTCGCGTACCGTCGAGATCGACACATCGGGCGGCCCTGGCCTCGGCATGTCGCAATATCGCGACTACGACTTCC
TGCAGCCCGGCGAAGTCGCACTGACCTTCGACGACGGCCCTTGGCCGGTGAATACTCCGGCGGTTCTGGCGGCGCTGGAG
GCCCAATGCGTCAAGGCGGTGTTCTTCCCGATCGGCAAGCACGCGAGCTGGCACCCGGCGATCCTCAAGCAGGTGATCGC
CGCCGGCCACACCGTCGGTTCGCACACCTGGTCGCACGTCAATCTCGCCAGCAAGCCGTTCGCCGAGGCCAAGAACGAAA
TCGAGAAGGGCATCAGCGGCGTAGCGCAATCGGCAGGTCAGCCGACCGCGCCGTTCTTCCGCTTTCCGCAGCTGCGCCAG
ACGCCGGAGCTGAAGGCGTATCTCGGCGAACGCAACATCGCGACCTTCTCGATCGACGTCGACTCCGAAGACTTCCGGAT
TCACAAGCCTGATCAGCTCATCAACGGCGTGATGGCCAAGCTGAAGAAGGCCGGCAAAGGCATCCTGCTGATGCACGACT
TCCAGAAGTCGACCGCGCAGGCGCTGCCCGAGCTGCTCGCGCAGCTGAAGGCCGGCGGCTACAAGATCGTTTTCATCACC
GCCAAGGATCGGGTTACCACGCTGCCGGAATACGACGCCCAGGTCGCGCCGGCGCAGCCCACCGCCTCGACCGCAAAGCC
GATCGCCAATGTGATACGCACCGTCGACTAG

Upstream 100 bases:

>100_bases
CGCATCAAACCACGCGGATAGCTCAAATTGCATACCGCTGCTTAACCAATTTGCGACCAAGTTCGCTGGGGCAAGCGGCT
AGTATGTGTGGGAGTTGACG

Downstream 100 bases:

>100_bases
CAGCGGCTGATACCAAAATAGTGACTTCGACAGACGGGCGCGCCAAGCGCCCGTTCTTGCGTCTCTGGTCTGCTTAACAA
ACCGTTGAGCTTAACGTGCT

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MRKFAVLAAGCSTLAVLVGLGAGRAWFTLTPSKIDAARAPSASEEITTGTIAARWPTPGGAPPRAAQSPAPNIQPARATA
DPALNAKPAALPAPAPVRQTCSNPNALGISRTVEIDTSGGPGLGMSQYRDYDFLQPGEVALTFDDGPWPVNTPAVLAALE
AQCVKAVFFPIGKHASWHPAILKQVIAAGHTVGSHTWSHVNLASKPFAEAKNEIEKGISGVAQSAGQPTAPFFRFPQLRQ
TPELKAYLGERNIATFSIDVDSEDFRIHKPDQLINGVMAKLKKAGKGILLMHDFQKSTAQALPELLAQLKAGGYKIVFIT
AKDRVTTLPEYDAQVAPAQPTASTAKPIANVIRTVD

Sequences:

>Translated_356_residues
MRKFAVLAAGCSTLAVLVGLGAGRAWFTLTPSKIDAARAPSASEEITTGTIAARWPTPGGAPPRAAQSPAPNIQPARATA
DPALNAKPAALPAPAPVRQTCSNPNALGISRTVEIDTSGGPGLGMSQYRDYDFLQPGEVALTFDDGPWPVNTPAVLAALE
AQCVKAVFFPIGKHASWHPAILKQVIAAGHTVGSHTWSHVNLASKPFAEAKNEIEKGISGVAQSAGQPTAPFFRFPQLRQ
TPELKAYLGERNIATFSIDVDSEDFRIHKPDQLINGVMAKLKKAGKGILLMHDFQKSTAQALPELLAQLKAGGYKIVFIT
AKDRVTTLPEYDAQVAPAQPTASTAKPIANVIRTVD
>Mature_356_residues
MRKFAVLAAGCSTLAVLVGLGAGRAWFTLTPSKIDAARAPSASEEITTGTIAARWPTPGGAPPRAAQSPAPNIQPARATA
DPALNAKPAALPAPAPVRQTCSNPNALGISRTVEIDTSGGPGLGMSQYRDYDFLQPGEVALTFDDGPWPVNTPAVLAALE
AQCVKAVFFPIGKHASWHPAILKQVIAAGHTVGSHTWSHVNLASKPFAEAKNEIEKGISGVAQSAGQPTAPFFRFPQLRQ
TPELKAYLGERNIATFSIDVDSEDFRIHKPDQLINGVMAKLKKAGKGILLMHDFQKSTAQALPELLAQLKAGGYKIVFIT
AKDRVTTLPEYDAQVAPAQPTASTAKPIANVIRTVD

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 37572; Mature: 37572

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKFAVLAAGCSTLAVLVGLGAGRAWFTLTPSKIDAARAPSASEEITTGTIAARWPTPGG
CCCEEEEHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCCCCCCCCCCCEEEEECCCCCC
APPRAAQSPAPNIQPARATADPALNAKPAALPAPAPVRQTCSNPNALGISRTVEIDTSGG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEEECCCC
PGLGMSQYRDYDFLQPGEVALTFDDGPWPVNTPAVLAALEAQCVKAVFFPIGKHASWHPA
CCCCHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
ILKQVIAAGHTVGSHTWSHVNLASKPFAEAKNEIEKGISGVAQSAGQPTAPFFRFPQLRQ
HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
TPELKAYLGERNIATFSIDVDSEDFRIHKPDQLINGVMAKLKKAGKGILLMHDFQKSTAQ
CCHHHHHHCCCCEEEEEEEECCCCCEEECHHHHHHHHHHHHHHCCCCEEEEECHHHHHHH
ALPELLAQLKAGGYKIVFITAKDRVTTLPEYDAQVAPAQPTASTAKPIANVIRTVD
HHHHHHHHHHCCCEEEEEEEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRKFAVLAAGCSTLAVLVGLGAGRAWFTLTPSKIDAARAPSASEEITTGTIAARWPTPGG
CCCEEEEHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCCCCCCCCCCCEEEEECCCCCC
APPRAAQSPAPNIQPARATADPALNAKPAALPAPAPVRQTCSNPNALGISRTVEIDTSGG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEEECCCC
PGLGMSQYRDYDFLQPGEVALTFDDGPWPVNTPAVLAALEAQCVKAVFFPIGKHASWHPA
CCCCHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
ILKQVIAAGHTVGSHTWSHVNLASKPFAEAKNEIEKGISGVAQSAGQPTAPFFRFPQLRQ
HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
TPELKAYLGERNIATFSIDVDSEDFRIHKPDQLINGVMAKLKKAGKGILLMHDFQKSTAQ
CCHHHHHHCCCCEEEEEEEECCCCCEEECHHHHHHHHHHHHHHCCCCEEEEECHHHHHHH
ALPELLAQLKAGGYKIVFITAKDRVTTLPEYDAQVAPAQPTASTAKPIANVIRTVD
HHHHHHHHHHCCCEEEEEEEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968; 8850088 [H]