| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192290459
Identifier: 192290459
GI number: 192290459
Start: 2237801
End: 2238775
Strand: Reverse
Name: 192290459
Synonym: Rpal_2066
Alternate gene names: NA
Gene position: 2238775-2237801 (Counterclockwise)
Preceding gene: 192290460
Following gene: 192290455
Centisome position: 38.98
GC content: 67.38
Gene sequence:
>975_bases ATGACCACGCTCACACCCTTTCCCGGATACGACGGGCTGATGTCGCTGTCGCGCCGCGAAGGCGTCGACATTCGCCCGAC GCTGCTCAGGGTGCTGACCGATCTGTATGTGCAGAGCCCGTCGCATACCGACGAGGAAGAGCGGCAGTTCGTCGAACTGA CGTCGCGGCTGATCGACGAGGTCGACGACGCCACCCGCGCGGTGGTACGCGCCCGGCTGTCGATCTATCCGCACACCCCT CGCGCGATCGCGCTGCGGCTGTCGCTGTCGTCATCGACTGATCAGCGGGTCCCGCTGGCGGCACCGATTCCGCCGGCTGA TACCACCGCCCCGGCGCGGCCGGCATCGCGCATTCCGACCGAAGCCGAACAGCGCGCCGCCAGCCTGTCGATGCAGCCGG AAGACGCTGCGCAGCTGTCCGAGATGTTCTTCTCCGCAGCCTCACAGGAGCGGACGCAGATCCTGTACAATCTCGCCGAG ACGCCGCTGCGCCCGGCGGCACGGATTCATCCGCCGCGGGCGATGCGCGCGATCGAAGTTCTGCACATGGCAGCCTATGT GTCGGACGTCGAGAACTTCACCGCCGAGCTGGGTGACGCGCTACTACTCACCGCGACAACGGCCGAGCGCGTCGTTTTCG ATGAAGGCGGCGAAGCGCTCGCCTGTGCGCTGAAGGCCCTCGGCATCAAGAGCCAGGTGTTCGAGCAGGTACTGATGTTC CTCGATCCCGCCAAGGGCTCGTCGGTCGATTGGGTGTACCGACTGTCGCGGCTGTACGATCGCTTGAGCGAACGCGCCGC GTTGATCATGCTGGCAGCGTGGCGCGGTGCCACCGTTGCTTCCACCCGCGCCAAATATCGCGCAGCGCTCTACGACGATG AGCGTCAGCGCGCGCGCAGCGCGACGCCGCAGGCCCGCCCCGCGGTGCAGCCCGGTGCCGCCTGGACGCCGCGCACCAAT ACGACGCGCGGCTAA
Upstream 100 bases:
>100_bases CGTTCTTGCGTCTCTGGTCTGCTTAACAAACCGTTGAGCTTAACGTGCTGTTAAAGCGACCGGGCTAAGCTACCGGTAAC TCGTACCATCTTGCGCAGCC
Downstream 100 bases:
>100_bases AGCGCCTCCTGGATCACCTAGAGCATCGCACTCTTCTCAGATGCACGAACTCTTCATCCTGTAACGCGCCCAGCAAAACC GGGCGTCTCGACGGATGACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MTTLTPFPGYDGLMSLSRREGVDIRPTLLRVLTDLYVQSPSHTDEEERQFVELTSRLIDEVDDATRAVVRARLSIYPHTP RAIALRLSLSSSTDQRVPLAAPIPPADTTAPARPASRIPTEAEQRAASLSMQPEDAAQLSEMFFSAASQERTQILYNLAE TPLRPAARIHPPRAMRAIEVLHMAAYVSDVENFTAELGDALLLTATTAERVVFDEGGEALACALKALGIKSQVFEQVLMF LDPAKGSSVDWVYRLSRLYDRLSERAALIMLAAWRGATVASTRAKYRAALYDDERQRARSATPQARPAVQPGAAWTPRTN TTRG
Sequences:
>Translated_324_residues MTTLTPFPGYDGLMSLSRREGVDIRPTLLRVLTDLYVQSPSHTDEEERQFVELTSRLIDEVDDATRAVVRARLSIYPHTP RAIALRLSLSSSTDQRVPLAAPIPPADTTAPARPASRIPTEAEQRAASLSMQPEDAAQLSEMFFSAASQERTQILYNLAE TPLRPAARIHPPRAMRAIEVLHMAAYVSDVENFTAELGDALLLTATTAERVVFDEGGEALACALKALGIKSQVFEQVLMF LDPAKGSSVDWVYRLSRLYDRLSERAALIMLAAWRGATVASTRAKYRAALYDDERQRARSATPQARPAVQPGAAWTPRTN TTRG >Mature_323_residues TTLTPFPGYDGLMSLSRREGVDIRPTLLRVLTDLYVQSPSHTDEEERQFVELTSRLIDEVDDATRAVVRARLSIYPHTPR AIALRLSLSSSTDQRVPLAAPIPPADTTAPARPASRIPTEAEQRAASLSMQPEDAAQLSEMFFSAASQERTQILYNLAET PLRPAARIHPPRAMRAIEVLHMAAYVSDVENFTAELGDALLLTATTAERVVFDEGGEALACALKALGIKSQVFEQVLMFL DPAKGSSVDWVYRLSRLYDRLSERAALIMLAAWRGATVASTRAKYRAALYDDERQRARSATPQARPAVQPGAAWTPRTNT TRG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35690; Mature: 35559
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLTPFPGYDGLMSLSRREGVDIRPTLLRVLTDLYVQSPSHTDEEERQFVELTSRLIDE CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH VDDATRAVVRARLSIYPHTPRAIALRLSLSSSTDQRVPLAAPIPPADTTAPARPASRIPT HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC EAEQRAASLSMQPEDAAQLSEMFFSAASQERTQILYNLAETPLRPAARIHPPRAMRAIEV HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHH LHMAAYVSDVENFTAELGDALLLTATTAERVVFDEGGEALACALKALGIKSQVFEQVLMF HHHHHHHHHHHHHHHHHCCEEEEEECCHHHEEECCCCHHHHHHHHHHCCHHHHHHHHHHH LDPAKGSSVDWVYRLSRLYDRLSERAALIMLAAWRGATVASTRAKYRAALYDDERQRARS HCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHC ATPQARPAVQPGAAWTPRTNTTRG CCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TTLTPFPGYDGLMSLSRREGVDIRPTLLRVLTDLYVQSPSHTDEEERQFVELTSRLIDE CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH VDDATRAVVRARLSIYPHTPRAIALRLSLSSSTDQRVPLAAPIPPADTTAPARPASRIPT HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC EAEQRAASLSMQPEDAAQLSEMFFSAASQERTQILYNLAETPLRPAARIHPPRAMRAIEV HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHH LHMAAYVSDVENFTAELGDALLLTATTAERVVFDEGGEALACALKALGIKSQVFEQVLMF HHHHHHHHHHHHHHHHHCCEEEEEECCHHHEEECCCCHHHHHHHHHHCCHHHHHHHHHHH LDPAKGSSVDWVYRLSRLYDRLSERAALIMLAAWRGATVASTRAKYRAALYDDERQRARS HCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHC ATPQARPAVQPGAAWTPRTNTTRG CCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA