Definition Rhodopseudomonas palustris TIE-1 chromosome, complete genome.
Accession NC_011004
Length 5,744,041

Click here to switch to the map view.

The map label for this gene is 192290439

Identifier: 192290439

GI number: 192290439

Start: 2216198

End: 2216566

Strand: Reverse

Name: 192290439

Synonym: Rpal_2046

Alternate gene names: NA

Gene position: 2216566-2216198 (Counterclockwise)

Preceding gene: 192290447

Following gene: 192290438

Centisome position: 38.59

GC content: 62.6

Gene sequence:

>369_bases
ATGGACGAGTTGATTGAAAGACTGGCCGATAAGGCCGGTCTGGACAAATCTGTTGCCGGCAAGACCATCGGCATCATTCT
CGCCTTTCTCCGCAATGAAGGACCGCCGGAGCCGGTCCAGGCTTTGATCGATAGCATTCCGGGCGCCGAAGCTGCGATCG
AAGCGGCAGGCTCTTCGCGTGGCGGGCTGAGCCGATTGATCGGCGGCGGCGTGATGGCGATGGGGACGAAGCTGCTCGGC
CTCGGCCTCGGCATGTCCCAGATCCAGACGATAGCCCGCGAACTGTTCAAGGCCGGCCGCGACAGAATTGGGGCGGAGAA
GATGGGCGCCATCATCGAAGGCACGCCCGGCCTCCGCCAGTTCACCTAA

Upstream 100 bases:

>100_bases
GCTGACTCGATGACCAGGGTCGCTTGTGTTTCGTTGCAGAGCAGATCAGGATGATTTTAGAACATGGACCGGTGATAAGA
GCCGGCGTGGCGGGGGCGTT

Downstream 100 bases:

>100_bases
ACCTAGTATCGAGTGCCATGACATATCCAATCGCTCAGCTCGATGGCATCACTGAGGTTGCCGCGAGCAAATTGAAATCG
GTAGGAATTCGCACCACCGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MDELIERLADKAGLDKSVAGKTIGIILAFLRNEGPPEPVQALIDSIPGAEAAIEAAGSSRGGLSRLIGGGVMAMGTKLLG
LGLGMSQIQTIARELFKAGRDRIGAEKMGAIIEGTPGLRQFT

Sequences:

>Translated_122_residues
MDELIERLADKAGLDKSVAGKTIGIILAFLRNEGPPEPVQALIDSIPGAEAAIEAAGSSRGGLSRLIGGGVMAMGTKLLG
LGLGMSQIQTIARELFKAGRDRIGAEKMGAIIEGTPGLRQFT
>Mature_122_residues
MDELIERLADKAGLDKSVAGKTIGIILAFLRNEGPPEPVQALIDSIPGAEAAIEAAGSSRGGLSRLIGGGVMAMGTKLLG
LGLGMSQIQTIARELFKAGRDRIGAEKMGAIIEGTPGLRQFT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12572; Mature: 12572

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDELIERLADKAGLDKSVAGKTIGIILAFLRNEGPPEPVQALIDSIPGAEAAIEAAGSSR
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHCCCCC
GGLSRLIGGGVMAMGTKLLGLGLGMSQIQTIARELFKAGRDRIGAEKMGAIIEGTPGLRQ
CHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC
FT
CC
>Mature Secondary Structure
MDELIERLADKAGLDKSVAGKTIGIILAFLRNEGPPEPVQALIDSIPGAEAAIEAAGSSR
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHCCCCC
GGLSRLIGGGVMAMGTKLLGLGLGMSQIQTIARELFKAGRDRIGAEKMGAIIEGTPGLRQ
CHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC
FT
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA