BacMap

Definition	Rhodopseudomonas palustris TIE-1 chromosome, complete genome.
Accession	NC_011004
Length	5,744,041

Click here to switch to the map view.

The map label for this gene is fadB1 [H]

Identifier: 192290407

GI number: 192290407

Start: 2185812

End: 2186591

Strand: Reverse

Name: fadB1 [H]

Synonym: Rpal_2014

Alternate gene names: 192290407

Gene position: 2186591-2185812 (Counterclockwise)

Preceding gene: 192290408

Following gene: 192290406

Centisome position: 38.07

GC content: 63.97

Gene sequence:

>780_bases
ATGAGCACATTCGAATTCATCATCGTCGAGCGTCAAAACGCGGTCGGCATCATCAAGCTCAACCGCCCGAAGATGCTGAA
TGCGCTGTCGTTCGGCGTGTTTCGTGAGATCGGCGCGGCGGTCGAGGATCTCGAGGCTGACGATGCGATCGGATGCATCC
TGATCACCGGCAGCGAGAAGGCGTTCGCCGCCGGCGCCGACATCAAGGAGATGCAGCCGAAGGGCTTCATCGACATGTTC
AACGAGGACTTCACTTCGATCGGCGGTGACCGGCTCGCGCGCTGCCGCAAGCCGACCGTCGCCGCGGTCGCCGGCTACGC
GCTCGGCGGCGGCTGCGAATTGGCAATGATGTGCGACATCATTATCGCCGCCGACACCGCCAAGTTCGGTCAACCGGAAA
TCACGCTGGGCACCATTCCGGGCATCGGCGGCACCCAGCGTCTCACCCGCGCTATCGGCAAGTACAAGGCGATGGACCTG
TGCCTCACCGGACGGATGATGGACGCGCAGGAAGCCGAACGCTCGGGCCTGGTCAGCCGCATCGTGCCGGCCGACAAGCT
GATGGAAGAAGCGCTCGGCGCCGCCGAAAAGATTGCCACGATGTCGCGCCCCACCGCAGCGATGGCCAAAAGCGCGGTGA
ACCGGGCGCTGGAAACTACGCTCGCCGAAGGTCTCGCCGTCGAGCGCGACCTGTTCCGATCGACCTTCGCGCTGGAAGAC
CGCGCCGAGGGCATGGCGGCGTTCATCGAAAAGCGCAAGCCGAACAACCAGAACCGCTGA

Upstream 100 bases:

>100_bases
GGATGTTCATGGCCTGAGGGCGAGCGCCCACCCCTTGAAGCCGCTGGCGGCAGCGGGCAGATTGCCCGCGGCCGCGGTCG
GCCTTCCGGGGACATGCATC

Downstream 100 bases:

>100_bases
CAACACGCTGACAGATCGCGGCCGCTGCCTCGGAAAGCGTGCACAATACCGCGCGCCCCATCGTCGCAGCGTTGCCGCAT
CACAACACCCCCCCGCTGCA

Product: Enoyl-CoA hydratase/isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MSTFEFIIVERQNAVGIIKLNRPKMLNALSFGVFREIGAAVEDLEADDAIGCILITGSEKAFAAGADIKEMQPKGFIDMF
NEDFTSIGGDRLARCRKPTVAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEITLGTIPGIGGTQRLTRAIGKYKAMDL
CLTGRMMDAQEAERSGLVSRIVPADKLMEEALGAAEKIATMSRPTAAMAKSAVNRALETTLAEGLAVERDLFRSTFALED
RAEGMAAFIEKRKPNNQNR

Sequences:

>Translated_259_residues
MSTFEFIIVERQNAVGIIKLNRPKMLNALSFGVFREIGAAVEDLEADDAIGCILITGSEKAFAAGADIKEMQPKGFIDMF
NEDFTSIGGDRLARCRKPTVAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEITLGTIPGIGGTQRLTRAIGKYKAMDL
CLTGRMMDAQEAERSGLVSRIVPADKLMEEALGAAEKIATMSRPTAAMAKSAVNRALETTLAEGLAVERDLFRSTFALED
RAEGMAAFIEKRKPNNQNR
>Mature_258_residues
STFEFIIVERQNAVGIIKLNRPKMLNALSFGVFREIGAAVEDLEADDAIGCILITGSEKAFAAGADIKEMQPKGFIDMFN
EDFTSIGGDRLARCRKPTVAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEITLGTIPGIGGTQRLTRAIGKYKAMDLC
LTGRMMDAQEAERSGLVSRIVPADKLMEEALGAAEKIATMSRPTAAMAKSAVNRALETTLAEGLAVERDLFRSTFALEDR
AEGMAAFIEKRKPNNQNR

Specific function: Could possibly oxidize fatty acids using specific components [H]

COG id: COG1024

COG function: function code I; Enoyl-CoA hydratase/carnithine racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]

Homologues:

Organism=Homo sapiens, GI194097323, Length=261, Percent_Identity=55.5555555555556, Blast_Score=286, Evalue=2e-77,
Organism=Homo sapiens, GI31542718, Length=243, Percent_Identity=31.2757201646091, Blast_Score=126, Evalue=2e-29,
Organism=Homo sapiens, GI4502327, Length=255, Percent_Identity=36.078431372549, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI68989263, Length=189, Percent_Identity=38.0952380952381, Blast_Score=115, Evalue=6e-26,
Organism=Homo sapiens, GI70995211, Length=265, Percent_Identity=30.188679245283, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI37594471, Length=248, Percent_Identity=30.241935483871, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI37594469, Length=248, Percent_Identity=30.241935483871, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI20127408, Length=178, Percent_Identity=35.9550561797753, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI150378541, Length=243, Percent_Identity=32.0987654320988, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI157694516, Length=233, Percent_Identity=27.0386266094421, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI213417737, Length=233, Percent_Identity=27.0386266094421, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI25453481, Length=269, Percent_Identity=23.7918215613383, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI51538573, Length=269, Percent_Identity=23.7918215613383, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI4757966, Length=283, Percent_Identity=24.0282685512367, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI51538581, Length=283, Percent_Identity=24.0282685512367, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI261878539, Length=93, Percent_Identity=43.010752688172, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI4757968, Length=268, Percent_Identity=22.7611940298507, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI49355787, Length=268, Percent_Identity=22.7611940298507, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI260274832, Length=255, Percent_Identity=22.7450980392157, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI45643119, Length=255, Percent_Identity=22.7450980392157, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI260275230, Length=255, Percent_Identity=22.7450980392157, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI62530384, Length=248, Percent_Identity=25, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI221136756, Length=260, Percent_Identity=22.6923076923077, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI221136753, Length=260, Percent_Identity=22.6923076923077, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI221307494, Length=260, Percent_Identity=22.6923076923077, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI157694520, Length=193, Percent_Identity=26.4248704663212, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1787659, Length=253, Percent_Identity=43.8735177865613, Blast_Score=208, Evalue=2e-55,
Organism=Escherichia coli, GI1787660, Length=256, Percent_Identity=35.15625, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI221142681, Length=274, Percent_Identity=33.9416058394161, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1788597, Length=259, Percent_Identity=34.7490347490347, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI87082183, Length=263, Percent_Identity=30.7984790874525, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1790281, Length=189, Percent_Identity=32.2751322751323, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788682, Length=217, Percent_Identity=31.7972350230415, Blast_Score=95, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17554946, Length=250, Percent_Identity=56, Blast_Score=268, Evalue=3e-72,
Organism=Caenorhabditis elegans, GI25145438, Length=240, Percent_Identity=50.4166666666667, Blast_Score=239, Evalue=1e-63,
Organism=Caenorhabditis elegans, GI17540306, Length=254, Percent_Identity=31.8897637795276, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17540714, Length=229, Percent_Identity=30.5676855895196, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17560910, Length=257, Percent_Identity=32.6848249027237, Blast_Score=114, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17558304, Length=227, Percent_Identity=33.0396475770925, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI25144276, Length=222, Percent_Identity=33.3333333333333, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17508953, Length=222, Percent_Identity=33.3333333333333, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17508951, Length=222, Percent_Identity=33.3333333333333, Blast_Score=103, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17536985, Length=280, Percent_Identity=28.9285714285714, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17534483, Length=224, Percent_Identity=27.6785714285714, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17549921, Length=206, Percent_Identity=31.5533980582524, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI25144160, Length=244, Percent_Identity=27.0491803278689, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI25144157, Length=244, Percent_Identity=27.0491803278689, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17535521, Length=255, Percent_Identity=25.4901960784314, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI25141363, Length=170, Percent_Identity=28.2352941176471, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6320241, Length=207, Percent_Identity=27.536231884058, Blast_Score=78, Evalue=1e-15,
Organism=Drosophila melanogaster, GI20129971, Length=254, Percent_Identity=56.2992125984252, Blast_Score=278, Evalue=3e-75,
Organism=Drosophila melanogaster, GI24653477, Length=254, Percent_Identity=56.2992125984252, Blast_Score=278, Evalue=3e-75,
Organism=Drosophila melanogaster, GI24653139, Length=262, Percent_Identity=35.8778625954198, Blast_Score=136, Evalue=1e-32,
Organism=Drosophila melanogaster, GI19922422, Length=260, Percent_Identity=28.8461538461538, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI21357171, Length=264, Percent_Identity=30.3030303030303, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24650670, Length=210, Percent_Identity=31.4285714285714, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI19920382, Length=249, Percent_Identity=32.1285140562249, Blast_Score=104, Evalue=5e-23,
Organism=Drosophila melanogaster, GI24654903, Length=185, Percent_Identity=28.6486486486486, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI19921000, Length=223, Percent_Identity=36.322869955157, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24583077, Length=223, Percent_Identity=36.322869955157, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24583079, Length=223, Percent_Identity=36.322869955157, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI28571729, Length=186, Percent_Identity=31.1827956989247, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28571730, Length=186, Percent_Identity=31.1827956989247, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014748
- InterPro:   IPR001753
- InterPro:   IPR018376 [H]

Pfam domain/function: PF00378 ECH [H]

EC number: =4.2.1.17 [H]

Molecular weight: Translated: 27792; Mature: 27660

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS00166 ENOYL_COA_HYDRATASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTFEFIIVERQNAVGIIKLNRPKMLNALSFGVFREIGAAVEDLEADDAIGCILITGSEK
CCCEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
AFAAGADIKEMQPKGFIDMFNEDFTSIGGDRLARCRKPTVAAVAGYALGGGCELAMMCDI
CEECCCCHHHCCCCCHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHH
IIAADTAKFGQPEITLGTIPGIGGTQRLTRAIGKYKAMDLCLTGRMMDAQEAERSGLVSR
HHEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHH
IVPADKLMEEALGAAEKIATMSRPTAAMAKSAVNRALETTLAEGLAVERDLFRSTFALED
HCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAEGMAAFIEKRKPNNQNR
HHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
STFEFIIVERQNAVGIIKLNRPKMLNALSFGVFREIGAAVEDLEADDAIGCILITGSEK
CCEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
AFAAGADIKEMQPKGFIDMFNEDFTSIGGDRLARCRKPTVAAVAGYALGGGCELAMMCDI
CEECCCCHHHCCCCCHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHH
IIAADTAKFGQPEITLGTIPGIGGTQRLTRAIGKYKAMDLCLTGRMMDAQEAERSGLVSR
HHEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHH
IVPADKLMEEALGAAEKIATMSRPTAAMAKSAVNRALETTLAEGLAVERDLFRSTFALED
HCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAEGMAAFIEKRKPNNQNR
HHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7751302; 11481430 [H]