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The map label for this gene is 192290396

Identifier: 192290396

GI number: 192290396

Start: 2167982

End: 2169232

Strand: Reverse

Name: 192290396

Synonym: Rpal_2003

Alternate gene names: NA

Gene position: 2169232-2167982 (Counterclockwise)

Preceding gene: 192290400

Following gene: 192290395

Centisome position: 37.76

GC content: 65.23

Gene sequence:

>1251_bases
ATGGACGTGCAGCGCAAGCTGGCCATCCTGGCGGACGCGGCGAAATACGACGCCTCCTGCGCCTCCAGCGGCACGGAGAA
ACGCGACAGCCAGGGCGGCAAGGGTCTCGGCTCCACTGCGCCCGGCATGGGCATCTGTCATTCATATGCGCCGGACGGGC
GCTGCATCTCGCTGCTCAAGGTGCTGCTCACCAACGCCTGTGCTTATGACTGCCTGTATTGCGTCAACCGGGCCTCTTCG
AACGTGCCGCGCGCCCGCTTCACCATCGACGAGGTGGTGCAGCTCACGCTCGACTTCTATCGCCGCAACTACATCGAGGG
GCTGTTTCTATCCTCGGGCATCATCCGCAGCGCCGACTACACCATGGAGCAGATCGTCGAAGTGGCGCGGCGCCTCCGGG
AAGAGCATCACTTCCGCGGCTACATTCATCTGAAGACGATCCCGGAAGCCGACGACGCGCTGATCGCCAAGGCCGGCCGC
TATGCGGACCGGCTCAGCATCAATATCGAGATGCCGGAGGAGACCAGCCTCGCTCAATTGGCGCCGGAGAAGAACGTCCG
CGCCATCCGCCGCACCATGGGGCGGCTGCGGCTGAAGCTGGATGAAGCGACCGAGGCCAAGGCCGAGGCGCGTAAAACCC
CCACCCGCGCCAAGCCGCCGCGCTTCGCACCGGCCGGCCAGAGCACGCAGATGATTGTCGGCGCCGACAGCGCCACCGAC
CAGACCATCCTCAATACATCCGCCAATCTCTACGGCTCGTACAATCTGAAGCGGGTGTACTACTCGGCGTTCAGCCCGAT
CCCGGATTCCAGCCGCGCGCTGCCGCTGCAGGCGCCGCCATTGGTGCGCGAACATCGGCTGTACCAGGCCGACTGGCTGA
TACGGTTCTACGGCTTCGACGCCGGCGAGATCATCGATCCGGCCGCCGGCATGCTGTCACTGGAGATGGATCCGAAGCTC
GCCTGGGCGCTGCGCCACCGCGAGCGCTTCCCGCTCGACGTCAACCGCGCCAGCCGCGAGGAATTGCTGCGCATTCCCGG
CTTCGGCCGCAAGGCGGTCGACCGCATTATCGATACGCGGCGCTACAGCGCGATCCGCGCTGCGGACCTCGCCAAACTCC
ACATCCCAAGGAACAAGGCGCTGCCGTTCATCGTTCTCCCCGACCACCGCCCGCCGACCTATCTGCTCGACGGAGCGCGG
CTGGCGGAGCGGTTTCAACCGAAAGCACAGCAACTGGGATTTGGGTTTTGA

Upstream 100 bases:

>100_bases
TATGTTCTAATAAATCCCTGCCTTGGTGCGGAGTCAATCGGGATCGCACCGAGGGCTTGCGGCAAATTTTTTCGCGAGAT
GAATCAAGGAGATTCCAAGC

Downstream 100 bases:

>100_bases
GACGTTGCGCTTGAGGGAGCCGTCATTGCGAGGAGCGAAGCGAGCCCCGAAGGAGGACGAACTAACAAGTTGTCAAGGGA
GGACAGAATAACCACCATGA

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: Radical SAM Domain Protein; Radical SAM Family Protein; Elongator /MiaB/NifB; Radical Sam Domain Protein; Radical SAM; Radical SAM Superfamily Protein; Biotin Synthase Related Domain-Containing Protein; Biotin Synthase Related Domain Containing Protein; Elongator Protein; Radical SAM Methylase Protein; Helix-Hairpin-Helix Motif; Radical SAM Protein

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MDVQRKLAILADAAKYDASCASSGTEKRDSQGGKGLGSTAPGMGICHSYAPDGRCISLLKVLLTNACAYDCLYCVNRASS
NVPRARFTIDEVVQLTLDFYRRNYIEGLFLSSGIIRSADYTMEQIVEVARRLREEHHFRGYIHLKTIPEADDALIAKAGR
YADRLSINIEMPEETSLAQLAPEKNVRAIRRTMGRLRLKLDEATEAKAEARKTPTRAKPPRFAPAGQSTQMIVGADSATD
QTILNTSANLYGSYNLKRVYYSAFSPIPDSSRALPLQAPPLVREHRLYQADWLIRFYGFDAGEIIDPAAGMLSLEMDPKL
AWALRHRERFPLDVNRASREELLRIPGFGRKAVDRIIDTRRYSAIRAADLAKLHIPRNKALPFIVLPDHRPPTYLLDGAR
LAERFQPKAQQLGFGF

Sequences:

>Translated_416_residues
MDVQRKLAILADAAKYDASCASSGTEKRDSQGGKGLGSTAPGMGICHSYAPDGRCISLLKVLLTNACAYDCLYCVNRASS
NVPRARFTIDEVVQLTLDFYRRNYIEGLFLSSGIIRSADYTMEQIVEVARRLREEHHFRGYIHLKTIPEADDALIAKAGR
YADRLSINIEMPEETSLAQLAPEKNVRAIRRTMGRLRLKLDEATEAKAEARKTPTRAKPPRFAPAGQSTQMIVGADSATD
QTILNTSANLYGSYNLKRVYYSAFSPIPDSSRALPLQAPPLVREHRLYQADWLIRFYGFDAGEIIDPAAGMLSLEMDPKL
AWALRHRERFPLDVNRASREELLRIPGFGRKAVDRIIDTRRYSAIRAADLAKLHIPRNKALPFIVLPDHRPPTYLLDGAR
LAERFQPKAQQLGFGF
>Mature_416_residues
MDVQRKLAILADAAKYDASCASSGTEKRDSQGGKGLGSTAPGMGICHSYAPDGRCISLLKVLLTNACAYDCLYCVNRASS
NVPRARFTIDEVVQLTLDFYRRNYIEGLFLSSGIIRSADYTMEQIVEVARRLREEHHFRGYIHLKTIPEADDALIAKAGR
YADRLSINIEMPEETSLAQLAPEKNVRAIRRTMGRLRLKLDEATEAKAEARKTPTRAKPPRFAPAGQSTQMIVGADSATD
QTILNTSANLYGSYNLKRVYYSAFSPIPDSSRALPLQAPPLVREHRLYQADWLIRFYGFDAGEIIDPAAGMLSLEMDPKL
AWALRHRERFPLDVNRASREELLRIPGFGRKAVDRIIDTRRYSAIRAADLAKLHIPRNKALPFIVLPDHRPPTYLLDGAR
LAERFQPKAQQLGFGF

Specific function: Unknown

COG id: COG4277

COG function: function code R; Predicted DNA-binding protein with the Helix-hairpin-helix motif

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46595; Mature: 46595

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVQRKLAILADAAKYDASCASSGTEKRDSQGGKGLGSTAPGMGICHSYAPDGRCISLLK
CCHHHHHHHHHHHHHHCCHHHCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHHH
VLLTNACAYDCLYCVNRASSNVPRARFTIDEVVQLTLDFYRRNYIEGLFLSSGIIRSADY
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
TMEQIVEVARRLREEHHFRGYIHLKTIPEADDALIAKAGRYADRLSINIEMPEETSLAQL
CHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCCCEEEEEEEECCCCCCHHHH
APEKNVRAIRRTMGRLRLKLDEATEAKAEARKTPTRAKPPRFAPAGQSTQMIVGADSATD
CCCCHHHHHHHHHHHHEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCC
QTILNTSANLYGSYNLKRVYYSAFSPIPDSSRALPLQAPPLVREHRLYQADWLIRFYGFD
CHHHCCCCCEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCEEEEEECCC
AGEIIDPAAGMLSLEMDPKLAWALRHRERFPLDVNRASREELLRIPGFGRKAVDRIIDTR
CCHHCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHH
RYSAIRAADLAKLHIPRNKALPFIVLPDHRPPTYLLDGARLAERFQPKAQQLGFGF
HHHHHHHHHHHHEECCCCCCCCEEEECCCCCCCEEECHHHHHHHHCCHHHHCCCCC
>Mature Secondary Structure
MDVQRKLAILADAAKYDASCASSGTEKRDSQGGKGLGSTAPGMGICHSYAPDGRCISLLK
CCHHHHHHHHHHHHHHCCHHHCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHHH
VLLTNACAYDCLYCVNRASSNVPRARFTIDEVVQLTLDFYRRNYIEGLFLSSGIIRSADY
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
TMEQIVEVARRLREEHHFRGYIHLKTIPEADDALIAKAGRYADRLSINIEMPEETSLAQL
CHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCCCEEEEEEEECCCCCCHHHH
APEKNVRAIRRTMGRLRLKLDEATEAKAEARKTPTRAKPPRFAPAGQSTQMIVGADSATD
CCCCHHHHHHHHHHHHEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCC
QTILNTSANLYGSYNLKRVYYSAFSPIPDSSRALPLQAPPLVREHRLYQADWLIRFYGFD
CHHHCCCCCEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCEEEEEECCC
AGEIIDPAAGMLSLEMDPKLAWALRHRERFPLDVNRASREELLRIPGFGRKAVDRIIDTR
CCHHCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHH
RYSAIRAADLAKLHIPRNKALPFIVLPDHRPPTYLLDGARLAERFQPKAQQLGFGF
HHHHHHHHHHHHEECCCCCCCCEEEECCCCCCCEEECHHHHHHHHCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA