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The map label for this gene is 192290395

Identifier: 192290395

GI number: 192290395

Start: 2166398

End: 2167885

Strand: Reverse

Name: 192290395

Synonym: Rpal_2002

Alternate gene names: NA

Gene position: 2167885-2166398 (Counterclockwise)

Preceding gene: 192290396

Following gene: 192290394

Centisome position: 37.74

GC content: 66.73

Gene sequence:

>1488_bases
ATGAACCGCATCCGGCTCGACAGCGACACCGACTTCGACGGCTGGCGCAAGGCGGCGCGGGAGCTGGTGCTGGCGGACGT
GGCACCGGCGGATGTGACCTGGACGGTGGCGGGCGACGAGCCGGAGCTGTTCGACGCGCCAGGGCGGGCGCCGGATGCTG
GGTCCTTTGCTGAAACGGCCGCGCCGTTCATTCATCCTGCACAATCCCCCTCCCCCGCGCAGACCTTCAACGTCCCTGCC
CGCTTCGTCGAGCTGGCGCACATTGCCATCCTGCATCGCGATCCGCAGCGCTTTGCGTACCTGTATCAGCTGCTGTGGCG
GCTCCGCGCCAATCCCGAGCTGATGCAGGTGGCAACCGATCCGGACGTGGCACGGCCACAGGCAATGGCCAAGGCGGTAA
GGCGCGACGAACACAAGATGCACGCCTTCGTTCGCTTCCGCGAGATCGGCCGCGAGCCGAAGTCGCGTTACGTCGCCTGG
TTCGAGCCCGAGCATCATATCGTCGAGCTCGCCGCGCCTTTCTTCGCACGGCGCTTCGCCGATATGGAATGGTCGATCCT
GACACCCGACGTCTGCGCACATTGGGACGGCCACGCGATCGCAATCACGCCCGGCGTCAGCAAGGCAATGGCGCCGTCGG
AGGATCGGCTGGAGGAAACCTGGCTGACTTACTACGCCAGTATCTTCAATCCGGCGCGGCTGAAGACCAAGGCGATGCAG
GCCGAAATGCCGAAGAAATATTGGCGCAATCTGCCCGAAGCGGCGCTGATCAAACCGCTGATCGAACACGCCGAGCGCAA
GGCGCATGCGATGGTCGCGGCCGAGGCGACCGCGCCGAGGAAACCGCAGCGACAGGAGCCGCCGATGACGAGAGCCGAGC
CGAAGGCCGACACGCTGGCGCATCTGCGCGAGGAAGCGAAAGATTGCCGCGCCTGCGACCTGTGGAAGGACGCCACCCAG
ACCGTGTTCGGCGAAGGCCCGCAGCACGCCACCGTGATGCTGGTCGGCGAGCAGCCCGGCGACAAGGAAGACCTCGCCGG
CAAGCCGTTCGTCGGCCCCGCCGGCCAGATGCTCGACCGCGCACTGGCGGAGGCCGGCGTCGACCGCAGCAAGACCTACG
TCACCAACGCGGTGAAGCACTTCAAATTCGTGCCGCGTGGCAAGATCCGCCTGCACCAGAAGCCGGCCACGCCGGAGATT
AAGGCTTGCCGGCAGTGGTACGAGCGCGAGCTCGCCGCGGTGCAGCCGCTGCTGGTGGTGGCGATGGGCGCCACCGCGGC
GCAGAGCGTGCTCGGCAGGATCACCCCCATCAACAAAACCCGCGGCCGCCTGATCGACCGCGACGACGGTCCGCAAGTGC
TGGTCACCGTCCACCCGTCCTACTTGCTGCGGCTGCCCGACGCCGACGCCAAGGCGCGCGAATACGCTCGCTTCGTCGAA
GATCTGAAGCTCATCGCCGCACATCTGAAGAAGGCGCATGCGGCGTAG

Upstream 100 bases:

>100_bases
TTGAGACGTTGCGCTTGAGGGAGCCGTCATTGCGAGGAGCGAAGCGAGCCCCGAAGGAGGACGAACTAACAAGTTGTCAA
GGGAGGACAGAATAACCACC

Downstream 100 bases:

>100_bases
TCGTTCTTCGATTGTGCCCGGTCCCCTCACCAACCTCGATCGCACACAGCGTCCGCCATCCGCGCGACATTTCCGCGCAG
CGCGCGGATCTATTTCCATT

Product: phage SPO1 DNA polymerase-like protein

Products: diphosphate; DNAn+1

Alternate protein names: Uracil-DNA Glycosylase; DNA Polymerase Related Protein; Uracil-DNA Glycosylase Superfamily Protein; Uracil DNA Glycosylase Superfamily Protein; Phage SPO1 DNA Polymerase-Like Protein; Uracil-DNA Glycosylase Superfamily; DNA Polymerase Bacteriophage-Type; DNA Polymerase; DNA Polymerase-Related Protein; DNA-Directed DNA Polymerase Protein; DNA-Directed DNA Polymerase; DNA Polymerase-Related Protein Bacteriophage-Type; Uracil-DNA Glycosylase Family 4 Protein; N-Terminus Of Bacteriophage-Type DNA Polymerase; Helicase/Glycosylase; Phage SPO1 DNA Polymerase Domain-Containing Protein; Uracil DNA Glycosylase Protein; Arginine Biosynthesis Bifunctional Protein ArgJ; Bacteriophage-Type DNA Polymerase; Uracil DNA Glycosylase; Uracil DNA Glycosylase Superfamily; Uracil-DNA Glycosylase Phage-Related Protein; Phage Spo1 DNA Polymerase-Related Protein; Phage Shock Protein E; Phage DNA Polymerase; Phage SPO1 DNA Polymerase; Phage Spo1 DNA Polymerase Domain Protein; Uracil-DNA Glycosylase-Like Protein; Uracil DNA Glycosylase Family Protein; Transcriptional Regulator Fis Family; Uracil-DNA Glycosylase-Related Protein; N-Terminus Of Phage SPO1 DNA Polymerase; Fis Family Transcriptional Regulator; DNA Polymerase-Like Protein; Leucyl-TRNA Synthetase

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MNRIRLDSDTDFDGWRKAARELVLADVAPADVTWTVAGDEPELFDAPGRAPDAGSFAETAAPFIHPAQSPSPAQTFNVPA
RFVELAHIAILHRDPQRFAYLYQLLWRLRANPELMQVATDPDVARPQAMAKAVRRDEHKMHAFVRFREIGREPKSRYVAW
FEPEHHIVELAAPFFARRFADMEWSILTPDVCAHWDGHAIAITPGVSKAMAPSEDRLEETWLTYYASIFNPARLKTKAMQ
AEMPKKYWRNLPEAALIKPLIEHAERKAHAMVAAEATAPRKPQRQEPPMTRAEPKADTLAHLREEAKDCRACDLWKDATQ
TVFGEGPQHATVMLVGEQPGDKEDLAGKPFVGPAGQMLDRALAEAGVDRSKTYVTNAVKHFKFVPRGKIRLHQKPATPEI
KACRQWYERELAAVQPLLVVAMGATAAQSVLGRITPINKTRGRLIDRDDGPQVLVTVHPSYLLRLPDADAKAREYARFVE
DLKLIAAHLKKAHAA

Sequences:

>Translated_495_residues
MNRIRLDSDTDFDGWRKAARELVLADVAPADVTWTVAGDEPELFDAPGRAPDAGSFAETAAPFIHPAQSPSPAQTFNVPA
RFVELAHIAILHRDPQRFAYLYQLLWRLRANPELMQVATDPDVARPQAMAKAVRRDEHKMHAFVRFREIGREPKSRYVAW
FEPEHHIVELAAPFFARRFADMEWSILTPDVCAHWDGHAIAITPGVSKAMAPSEDRLEETWLTYYASIFNPARLKTKAMQ
AEMPKKYWRNLPEAALIKPLIEHAERKAHAMVAAEATAPRKPQRQEPPMTRAEPKADTLAHLREEAKDCRACDLWKDATQ
TVFGEGPQHATVMLVGEQPGDKEDLAGKPFVGPAGQMLDRALAEAGVDRSKTYVTNAVKHFKFVPRGKIRLHQKPATPEI
KACRQWYERELAAVQPLLVVAMGATAAQSVLGRITPINKTRGRLIDRDDGPQVLVTVHPSYLLRLPDADAKAREYARFVE
DLKLIAAHLKKAHAA
>Mature_495_residues
MNRIRLDSDTDFDGWRKAARELVLADVAPADVTWTVAGDEPELFDAPGRAPDAGSFAETAAPFIHPAQSPSPAQTFNVPA
RFVELAHIAILHRDPQRFAYLYQLLWRLRANPELMQVATDPDVARPQAMAKAVRRDEHKMHAFVRFREIGREPKSRYVAW
FEPEHHIVELAAPFFARRFADMEWSILTPDVCAHWDGHAIAITPGVSKAMAPSEDRLEETWLTYYASIFNPARLKTKAMQ
AEMPKKYWRNLPEAALIKPLIEHAERKAHAMVAAEATAPRKPQRQEPPMTRAEPKADTLAHLREEAKDCRACDLWKDATQ
TVFGEGPQHATVMLVGEQPGDKEDLAGKPFVGPAGQMLDRALAEAGVDRSKTYVTNAVKHFKFVPRGKIRLHQKPATPEI
KACRQWYERELAAVQPLLVVAMGATAAQSVLGRITPINKTRGRLIDRDDGPQVLVTVHPSYLLRLPDADAKAREYARFVE
DLKLIAAHLKKAHAA

Specific function: Unknown

COG id: COG1573

COG function: function code L; Uracil-DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 55515; Mature: 55515

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRIRLDSDTDFDGWRKAARELVLADVAPADVTWTVAGDEPELFDAPGRAPDAGSFAETA
CCCEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHH
APFIHPAQSPSPAQTFNVPARFVELAHIAILHRDPQRFAYLYQLLWRLRANPELMQVATD
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECC
PDVARPQAMAKAVRRDEHKMHAFVRFREIGREPKSRYVAWFEPEHHIVELAAPFFARRFA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCEEEEECCCHHHHHHHHHHHHHHHC
DMEWSILTPDVCAHWDGHAIAITPGVSKAMAPSEDRLEETWLTYYASIFNPARLKTKAMQ
CCCCEEECCHHHHCCCCCEEEECCCCCHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
AEMPKKYWRNLPEAALIKPLIEHAERKAHAMVAAEATAPRKPQRQEPPMTRAEPKADTLA
HHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCHHHHH
HLREEAKDCRACDLWKDATQTVFGEGPQHATVMLVGEQPGDKEDLAGKPFVGPAGQMLDR
HHHHHHHHCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHCCCCCCCCCHHHHHHH
ALAEAGVDRSKTYVTNAVKHFKFVPRGKIRLHQKPATPEIKACRQWYERELAAVQPLLVV
HHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
AMGATAAQSVLGRITPINKTRGRLIDRDDGPQVLVTVHPSYLLRLPDADAKAREYARFVE
HHCHHHHHHHHHHCCCCCCCCCCEECCCCCCEEEEEECCHHEEECCCCCHHHHHHHHHHH
DLKLIAAHLKKAHAA
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MNRIRLDSDTDFDGWRKAARELVLADVAPADVTWTVAGDEPELFDAPGRAPDAGSFAETA
CCCEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHH
APFIHPAQSPSPAQTFNVPARFVELAHIAILHRDPQRFAYLYQLLWRLRANPELMQVATD
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECC
PDVARPQAMAKAVRRDEHKMHAFVRFREIGREPKSRYVAWFEPEHHIVELAAPFFARRFA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCEEEEECCCHHHHHHHHHHHHHHHC
DMEWSILTPDVCAHWDGHAIAITPGVSKAMAPSEDRLEETWLTYYASIFNPARLKTKAMQ
CCCCEEECCHHHHCCCCCEEEECCCCCHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
AEMPKKYWRNLPEAALIKPLIEHAERKAHAMVAAEATAPRKPQRQEPPMTRAEPKADTLA
HHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCHHHHH
HLREEAKDCRACDLWKDATQTVFGEGPQHATVMLVGEQPGDKEDLAGKPFVGPAGQMLDR
HHHHHHHHCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHCCCCCCCCCHHHHHHH
ALAEAGVDRSKTYVTNAVKHFKFVPRGKIRLHQKPATPEIKACRQWYERELAAVQPLLVV
HHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
AMGATAAQSVLGRITPINKTRGRLIDRDDGPQVLVTVHPSYLLRLPDADAKAREYARFVE
HHCHHHHHHHHHHCCCCCCCCCCEECCCCCCEEEEEECCHHEEECCCCCHHHHHHHHHHH
DLKLIAAHLKKAHAA
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA