| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is fabG [H]
Identifier: 192290330
GI number: 192290330
Start: 2089413
End: 2090192
Strand: Reverse
Name: fabG [H]
Synonym: Rpal_1937
Alternate gene names: 192290330
Gene position: 2090192-2089413 (Counterclockwise)
Preceding gene: 192290331
Following gene: 192290329
Centisome position: 36.39
GC content: 68.46
Gene sequence:
>780_bases ATGGACCTGCATCTGCGCGGCAAGCGCGTCCTCATCACCGGCGCATCAAAGGGCATCGGCGCCGCCGCGGCCGAAGCTTT CGCCGAGGAAGGCTGTCATCTGCGGCTCGCCGCCCGCAACAAGGATGCGCTGGAAGCCCTCGCCGCGCGGCTGCGCGACC ATCACGGCGTCGGCGTCGCGGTCCACGTCGCGGACCTTCGCAGCAAGGCGGACCTGGCTCAGCTCGCCGCCCAGGCAACG GACATCGACATCCTGATCAACAATGCCGGCGATATTCCGCGCGGCACCATCGATGCGATCGACGACGCCACTTGGCGCCA TGCGTGGGATCTGAAGGTGTTCGGCTTCATCGATCTCACCCGGCTGGTGTACGCGCAGATGAAGGCGCGCGGCGGCGGCG TCATCATCAACGACATCGGCGCGGCCGGCGAACGGCTCGACGCCGGTTATATCTGCGGCTCCGCCGGCAACGCTGCGCTG ATGGCGTTCACCCGGGCGCTCGGCAGCCGCAGCCTCGCCGACAACATCCGCGTCGTCGGCATCAATCCCGGGCCGGTCGG CACCGATCGCTATCTCGGGCGGATGAAGGGCCGCGCCAAAGCAGAGCTCGGCGACGAGAGCCGCTACCTCGAGCTGCAGA AAAACCTTCCGCTCGGCCGCCCCGCGCAACCGCGCGAGATCGCCGACCTGATGGCCTATCTGGCCTCCGACCGATCCGGC TACACCACAGGCGCGATTTTCTCGGTCGACGGCGGACTCAGCGCCGGCTGGCCGGCCTGA
Upstream 100 bases:
>100_bases CGTGTGGGAGGGCGATCCGGCGCGCTTTGCCGCCGAGGCCGGAGAGGGCTATCTGTAGCGGCGGCGTCCGGCCGAACCGG ACCTCACCGAAGGGCACTCG
Downstream 100 bases:
>100_bases ACTGCGGCGGCCGCGCGCCGGCCGCAAGGCAGCCATGACGATGCGCCGCACACTCCTTCCGCCGCAGCCGCGCCGCAACG GATCGTCAACCGCACGGGCG
Product: short chain dehydrogenase
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 259; Mature: 259
Protein sequence:
>259_residues MDLHLRGKRVLITGASKGIGAAAAEAFAEEGCHLRLAARNKDALEALAARLRDHHGVGVAVHVADLRSKADLAQLAAQAT DIDILINNAGDIPRGTIDAIDDATWRHAWDLKVFGFIDLTRLVYAQMKARGGGVIINDIGAAGERLDAGYICGSAGNAAL MAFTRALGSRSLADNIRVVGINPGPVGTDRYLGRMKGRAKAELGDESRYLELQKNLPLGRPAQPREIADLMAYLASDRSG YTTGAIFSVDGGLSAGWPA
Sequences:
>Translated_259_residues MDLHLRGKRVLITGASKGIGAAAAEAFAEEGCHLRLAARNKDALEALAARLRDHHGVGVAVHVADLRSKADLAQLAAQAT DIDILINNAGDIPRGTIDAIDDATWRHAWDLKVFGFIDLTRLVYAQMKARGGGVIINDIGAAGERLDAGYICGSAGNAAL MAFTRALGSRSLADNIRVVGINPGPVGTDRYLGRMKGRAKAELGDESRYLELQKNLPLGRPAQPREIADLMAYLASDRSG YTTGAIFSVDGGLSAGWPA >Mature_259_residues MDLHLRGKRVLITGASKGIGAAAAEAFAEEGCHLRLAARNKDALEALAARLRDHHGVGVAVHVADLRSKADLAQLAAQAT DIDILINNAGDIPRGTIDAIDDATWRHAWDLKVFGFIDLTRLVYAQMKARGGGVIINDIGAAGERLDAGYICGSAGNAAL MAFTRALGSRSLADNIRVVGINPGPVGTDRYLGRMKGRAKAELGDESRYLELQKNLPLGRPAQPREIADLMAYLASDRSG YTTGAIFSVDGGLSAGWPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI10190704, Length=258, Percent_Identity=31.0077519379845, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI66933014, Length=253, Percent_Identity=32.0158102766798, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI32483357, Length=255, Percent_Identity=28.2352941176471, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI7705925, Length=257, Percent_Identity=26.0700389105058, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=28.6885245901639, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI109715829, Length=195, Percent_Identity=31.2820512820513, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI20149619, Length=243, Percent_Identity=31.6872427983539, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI5031737, Length=253, Percent_Identity=25.6916996047431, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI19923817, Length=263, Percent_Identity=23.574144486692, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI126723750, Length=258, Percent_Identity=24.4186046511628, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=34.375, Blast_Score=103, Evalue=9e-24, Organism=Escherichia coli, GI1787905, Length=262, Percent_Identity=31.2977099236641, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787335, Length=255, Percent_Identity=31.3725490196078, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1786812, Length=262, Percent_Identity=27.4809160305344, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1789208, Length=257, Percent_Identity=27.6264591439689, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI2367365, Length=263, Percent_Identity=29.277566539924, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI87082160, Length=260, Percent_Identity=27.6923076923077, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1790717, Length=261, Percent_Identity=25.2873563218391, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1788459, Length=253, Percent_Identity=26.4822134387352, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI2367175, Length=255, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787820, Length=196, Percent_Identity=30.6122448979592, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789378, Length=259, Percent_Identity=25.8687258687259, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17561402, Length=256, Percent_Identity=31.25, Blast_Score=107, Evalue=8e-24, Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=30.1526717557252, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17563726, Length=262, Percent_Identity=28.6259541984733, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=28.4615384615385, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=31.6205533596838, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=29.0836653386454, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17560676, Length=255, Percent_Identity=27.4509803921569, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=29.0076335877863, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI193204405, Length=271, Percent_Identity=31.7343173431734, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=29.718875502008, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17536651, Length=256, Percent_Identity=26.953125, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17531453, Length=271, Percent_Identity=28.7822878228782, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=28.735632183908, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17536025, Length=255, Percent_Identity=27.4509803921569, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17560332, Length=271, Percent_Identity=33.210332103321, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=29.0076335877863, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=27.3408239700375, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=29.277566539924, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17562904, Length=265, Percent_Identity=28.6792452830189, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=25.4980079681275, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI25147288, Length=259, Percent_Identity=26.2548262548263, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17551412, Length=275, Percent_Identity=29.4545454545455, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17561272, Length=255, Percent_Identity=28.6274509803922, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17538480, Length=276, Percent_Identity=28.2608695652174, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17560220, Length=271, Percent_Identity=30.2583025830258, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=249, Percent_Identity=32.9317269076305, Blast_Score=81, Evalue=2e-16, Organism=Drosophila melanogaster, GI23397609, Length=257, Percent_Identity=34.2412451361868, Blast_Score=116, Evalue=1e-26, Organism=Drosophila melanogaster, GI24644339, Length=261, Percent_Identity=31.8007662835249, Blast_Score=110, Evalue=7e-25, Organism=Drosophila melanogaster, GI28571526, Length=259, Percent_Identity=30.5019305019305, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI21357041, Length=259, Percent_Identity=29.7297297297297, Blast_Score=100, Evalue=8e-22, Organism=Drosophila melanogaster, GI24644337, Length=265, Percent_Identity=31.6981132075472, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI21355319, Length=257, Percent_Identity=25.6809338521401, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI24643142, Length=254, Percent_Identity=26.3779527559055, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI21358495, Length=206, Percent_Identity=31.5533980582524, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24639444, Length=255, Percent_Identity=27.0588235294118, Blast_Score=69, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 27337; Mature: 27337
Theoretical pI: Translated: 8.24; Mature: 8.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLHLRGKRVLITGASKGIGAAAAEAFAEEGCHLRLAARNKDALEALAARLRDHHGVGVA CCCEECCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEE VHVADLRSKADLAQLAAQATDIDILINNAGDIPRGTIDAIDDATWRHAWDLKVFGFIDLT EEEEHHHCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHCCCCCCCEEECEEEEHHHHHH RLVYAQMKARGGGVIINDIGAAGERLDAGYICGSAGNAALMAFTRALGSRSLADNIRVVG HHHHHHHHCCCCCEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE INPGPVGTDRYLGRMKGRAKAELGDESRYLELQKNLPLGRPAQPREIADLMAYLASDRSG ECCCCCCHHHHHHHHCCCCCCCCCCCHHEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCC YTTGAIFSVDGGLSAGWPA CCCCEEEEECCCCCCCCCC >Mature Secondary Structure MDLHLRGKRVLITGASKGIGAAAAEAFAEEGCHLRLAARNKDALEALAARLRDHHGVGVA CCCEECCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEE VHVADLRSKADLAQLAAQATDIDILINNAGDIPRGTIDAIDDATWRHAWDLKVFGFIDLT EEEEHHHCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHCCCCCCCEEECEEEEHHHHHH RLVYAQMKARGGGVIINDIGAAGERLDAGYICGSAGNAALMAFTRALGSRSLADNIRVVG HHHHHHHHCCCCCEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE INPGPVGTDRYLGRMKGRAKAELGDESRYLELQKNLPLGRPAQPREIADLMAYLASDRSG ECCCCCCHHHHHHHHCCCCCCCCCCCHHEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCC YTTGAIFSVDGGLSAGWPA CCCCEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10684935 [H]