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The map label for this gene is yeaM [H]

Identifier: 192290288

GI number: 192290288

Start: 2039796

End: 2040656

Strand: Reverse

Name: yeaM [H]

Synonym: Rpal_1892

Alternate gene names: 192290288

Gene position: 2040656-2039796 (Counterclockwise)

Preceding gene: 192290290

Following gene: 192290284

Centisome position: 35.53

GC content: 63.18

Gene sequence:

>861_bases
ATGAAAGTCGCAACGCGGCGAAAAGACACTGCTGAATTGCGCGCATACCACAGGCAGGAAGGCCCCGTAGCAGCCGCAAA
TTGTGCAGGACACCTTCAGACCATTGCGCGACCGGTCGCCGCGATGACGGCCACCTATCCGAACGAGAGCACCAGCACGC
GTCACTTGCATCGGCGCGACCAGTTCATCCTGCAGATCACGGGTGTAACCGCCATGATGACCGAACGCGGTCATTTCGTG
GTGCCGCCCGGTCATGGCTTGTGGATTCCTGCCGGCGTCGTGCATCAATCGCGTGCCTGGGGTGAGGTCGAGGCGCAGAC
GATCTACGTCACGCCGAATCGCGAGCGGAAGGCCTCCGATACGTGCCGCCTGATCCGCGCCTCGTCGCTGATCGAAGCGC
TGATGGACGAGGCCGTCCGCATACCTGAGATCTACGACCAGAATGGACGCGACGGCACGCTCATCGAACTTCTCCTCACC
GAGATCGCGCGGATGCCGGAGGTGACGCTGCACGTGCAGATGCCGCCGGACCCGCGCCTTGCCGAGATCTGCAAGGCGGT
GCTGGGCGATCCGTCGTCGAACCTCACTCTTGACCACTGGGCCGACAAATGCGGCCTCAGCCGCCGGACGCTAACCCGGC
TATTCCGCCGAGAGACTGGCCAGAGCTTTTCAGGCTGGCGGCAGCGCGTGCGACTTTTGGAAGCCTTGGCACGTCTCGGA
GCAGGCGAAACTGTGACTGGCGTCGCGCTCGACGTCGGCTACGATAGTCCAAGTGCCTTCGCCGCGATGTTCAAGCGCGA
GCTTGGCTCAGCACCGCGGCACTATCTTCGTTGGACGGATCAGGAGGTGGCGCTGCGCTAA

Upstream 100 bases:

>100_bases
TACCTGATCGGGGACAACAATCATCGCGATCGGGCCATGTCTGGCCCGGAAGATGCAAAAGAGCGCTGCGAAAACGCCAC
GGATCGGGAGTTCACGACCT

Downstream 100 bases:

>100_bases
CGTCCTCAGATCGCTCGAAAACGCTCTAAGCTGGATTGCTTCGCTTCGCTCGCAATGACGAAGAAACTCAAGTCATCGCG
CGGATCAACGCCATCCCGCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MKVATRRKDTAELRAYHRQEGPVAAANCAGHLQTIARPVAAMTATYPNESTSTRHLHRRDQFILQITGVTAMMTERGHFV
VPPGHGLWIPAGVVHQSRAWGEVEAQTIYVTPNRERKASDTCRLIRASSLIEALMDEAVRIPEIYDQNGRDGTLIELLLT
EIARMPEVTLHVQMPPDPRLAEICKAVLGDPSSNLTLDHWADKCGLSRRTLTRLFRRETGQSFSGWRQRVRLLEALARLG
AGETVTGVALDVGYDSPSAFAAMFKRELGSAPRHYLRWTDQEVALR

Sequences:

>Translated_286_residues
MKVATRRKDTAELRAYHRQEGPVAAANCAGHLQTIARPVAAMTATYPNESTSTRHLHRRDQFILQITGVTAMMTERGHFV
VPPGHGLWIPAGVVHQSRAWGEVEAQTIYVTPNRERKASDTCRLIRASSLIEALMDEAVRIPEIYDQNGRDGTLIELLLT
EIARMPEVTLHVQMPPDPRLAEICKAVLGDPSSNLTLDHWADKCGLSRRTLTRLFRRETGQSFSGWRQRVRLLEALARLG
AGETVTGVALDVGYDSPSAFAAMFKRELGSAPRHYLRWTDQEVALR
>Mature_286_residues
MKVATRRKDTAELRAYHRQEGPVAAANCAGHLQTIARPVAAMTATYPNESTSTRHLHRRDQFILQITGVTAMMTERGHFV
VPPGHGLWIPAGVVHQSRAWGEVEAQTIYVTPNRERKASDTCRLIRASSLIEALMDEAVRIPEIYDQNGRDGTLIELLLT
EIARMPEVTLHVQMPPDPRLAEICKAVLGDPSSNLTLDHWADKCGLSRRTLTRLFRRETGQSFSGWRQRVRLLEALARLG
AGETVTGVALDVGYDSPSAFAAMFKRELGSAPRHYLRWTDQEVALR

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=231, Percent_Identity=32.9004329004329, Blast_Score=117, Evalue=6e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 31955; Mature: 31955

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVATRRKDTAELRAYHRQEGPVAAANCAGHLQTIARPVAAMTATYPNESTSTRHLHRRD
CCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHC
QFILQITGVTAMMTERGHFVVPPGHGLWIPAGVVHQSRAWGEVEAQTIYVTPNRERKASD
CEEEEEECHHEEEECCCCEEECCCCCEEECHHHHHCCCCCCCEEEEEEEECCCCCCCHHH
TCRLIRASSLIEALMDEAVRIPEIYDQNGRDGTLIELLLTEIARMPEVTLHVQMPPDPRL
HHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCH
AEICKAVLGDPSSNLTLDHWADKCGLSRRTLTRLFRRETGQSFSGWRQRVRLLEALARLG
HHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
AGETVTGVALDVGYDSPSAFAAMFKRELGSAPRHYLRWTDQEVALR
CCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCHHHHCCCCHHHCCC
>Mature Secondary Structure
MKVATRRKDTAELRAYHRQEGPVAAANCAGHLQTIARPVAAMTATYPNESTSTRHLHRRD
CCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHC
QFILQITGVTAMMTERGHFVVPPGHGLWIPAGVVHQSRAWGEVEAQTIYVTPNRERKASD
CEEEEEECHHEEEECCCCEEECCCCCEEECHHHHHCCCCCCCEEEEEEEECCCCCCCHHH
TCRLIRASSLIEALMDEAVRIPEIYDQNGRDGTLIELLLTEIARMPEVTLHVQMPPDPRL
HHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCH
AEICKAVLGDPSSNLTLDHWADKCGLSRRTLTRLFRRETGQSFSGWRQRVRLLEALARLG
HHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
AGETVTGVALDVGYDSPSAFAAMFKRELGSAPRHYLRWTDQEVALR
CCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCHHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]