| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192290283
Identifier: 192290283
GI number: 192290283
Start: 2034948
End: 2035388
Strand: Reverse
Name: 192290283
Synonym: Rpal_1887
Alternate gene names: NA
Gene position: 2035388-2034948 (Counterclockwise)
Preceding gene: 192290284
Following gene: 192290279
Centisome position: 35.43
GC content: 66.21
Gene sequence:
>441_bases ATGGCCGTTCGGTCTGGTTTTGTCGTTGCTGCCCTGGTTGCCCTCGCGCTGTCGCCCACAGGGGCGATCGCCCAATCGGC CGGTCCGCAGGGCACCTGGTTGACCCAGGCCGGCGACGCCAAGGTCCGGATCAAGAGCTGCGGCAACGCGCTGTGCGGTA GCATCGTCTGGCTGAAGACACCGATCGACCCAAATACCGGTAAGCCGCAGGTCGACGACAAGAACGGCGATCCGCAGCTC GCCTCGCGGCCGATCATCGGCCTGCAGATCTTCGGCGACATGCGCCCGGTGTCGCAGGGCAAATGGTCCGGCCACATCTA CAATGCCGACGACGGCAAGACCTATGAGAGCAGCATCTCGCACACCGGCCCGACCAGCCTGCGGGTCGAGGGCTGCGTCG GCACCCTGTGCGGCGGCGAAACCTGGACGCTGACGCGCTAA
Upstream 100 bases:
>100_bases CATACGATTGCACGAATCGGCCGCTCTGCTATCCAACCGCCCGCCGCACTGCTTCTGAATGCTGTTCGAGGCTCCCGCGA GTATCGTTTGGAGGTATGGA
Downstream 100 bases:
>100_bases GCGACCGCCCTATCGGGCATCGCCTTCAAAGCCAGGGCGGCGGACGCATAGCCCCCGCCCGCCCCGTCGATGAAGTGGAC GTGATCGCTGCGCGTCACCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 146; Mature: 145
Protein sequence:
>146_residues MAVRSGFVVAALVALALSPTGAIAQSAGPQGTWLTQAGDAKVRIKSCGNALCGSIVWLKTPIDPNTGKPQVDDKNGDPQL ASRPIIGLQIFGDMRPVSQGKWSGHIYNADDGKTYESSISHTGPTSLRVEGCVGTLCGGETWTLTR
Sequences:
>Translated_146_residues MAVRSGFVVAALVALALSPTGAIAQSAGPQGTWLTQAGDAKVRIKSCGNALCGSIVWLKTPIDPNTGKPQVDDKNGDPQL ASRPIIGLQIFGDMRPVSQGKWSGHIYNADDGKTYESSISHTGPTSLRVEGCVGTLCGGETWTLTR >Mature_145_residues AVRSGFVVAALVALALSPTGAIAQSAGPQGTWLTQAGDAKVRIKSCGNALCGSIVWLKTPIDPNTGKPQVDDKNGDPQLA SRPIIGLQIFGDMRPVSQGKWSGHIYNADDGKTYESSISHTGPTSLRVEGCVGTLCGGETWTLTR
Specific function: Unknown
COG id: COG4731
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15223; Mature: 15092
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVRSGFVVAALVALALSPTGAIAQSAGPQGTWLTQAGDAKVRIKSCGNALCGSIVWLKT CCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCEEEECCCCEEEEECCCCHHHCCEEEEEC PIDPNTGKPQVDDKNGDPQLASRPIIGLQIFGDMRPVSQGKWSGHIYNADDGKTYESSIS CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCC HTGPTSLRVEGCVGTLCGGETWTLTR CCCCCEEEECCCEEEECCCCEEEECC >Mature Secondary Structure AVRSGFVVAALVALALSPTGAIAQSAGPQGTWLTQAGDAKVRIKSCGNALCGSIVWLKT CCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCEEEECCCCEEEEECCCCHHHCCEEEEEC PIDPNTGKPQVDDKNGDPQLASRPIIGLQIFGDMRPVSQGKWSGHIYNADDGKTYESSIS CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCC HTGPTSLRVEGCVGTLCGGETWTLTR CCCCCEEEECCCEEEECCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA