| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
Click here to switch to the map view.
The map label for this gene is 192290209
Identifier: 192290209
GI number: 192290209
Start: 1947800
End: 1948393
Strand: Reverse
Name: 192290209
Synonym: Rpal_1813
Alternate gene names: NA
Gene position: 1948393-1947800 (Counterclockwise)
Preceding gene: 192290211
Following gene: 192290208
Centisome position: 33.92
GC content: 68.01
Gene sequence:
>594_bases ATGAGCTTCGTGACGCGTCGCGCCGCGCTGGCCTTTGTTGCGCTGGCCGCCCTGCATCTGCCGGCTGCGGCCCAGCAGCA GCCGTTGCCGCCGAAGTCGCAGGCCGGCCCGAACACCTATGGGCCGGACGAACTGGTCGGCGCCGGCCACCGCTTCTTCG GCAACGTCTCGCGCGGCCTCGCCTCGGTGATCGAGCGCGCGGTCAGCCAATGGGGCCTGCCCAATGGCTATGTGCTCGGC GAGGAAGGCTCGGGCGCCTTCGTCGCCGGCCTGCGCTACGGCGAAGGTACGCTCTACACCAAGAACGCTGGCGATCTGAA AGTGTACTGGCAGGGGCCGTCGGTTGGCTTCGACTGGGGCGGCAACGGCGCCCGCACCATGACGCTGGTGTATAACCTGC CCTCCACCAACGCGATCTATCAGCGGTTCGGCGGCATCGACGGCTCGGCCTATGTGGTCGGCGGCTTCGGCATGACCGCG CTGACCGCCAACGGCATCGTGCTGGTGCCGATCCAGTCCGGCATCGGGCTGCGGCTGGGCGCCAATATCGGCTACCTGAA GTTCACCCCCTCGGCGACCTGGAATCCGTTCTGA
Upstream 100 bases:
>100_bases GCCGATAACGTTCCGAGTCGGGGACAAACGTCGCTACAGGATGCCCGTCAGCATCAGGTTAAAGCGGCGCAAGGGATTTG AAGACCCAGGGGTGAATTGC
Downstream 100 bases:
>100_bases TCCGGGCCGCCCGCGCGCCCTACAGCCAGAGCGCGTAATCGGTTACCTATTCACGTTAACGCCGCAATGCACTGGCGCGA AGGCGCCGGCTCATGGCATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 197; Mature: 196
Protein sequence:
>197_residues MSFVTRRAALAFVALAALHLPAAAQQQPLPPKSQAGPNTYGPDELVGAGHRFFGNVSRGLASVIERAVSQWGLPNGYVLG EEGSGAFVAGLRYGEGTLYTKNAGDLKVYWQGPSVGFDWGGNGARTMTLVYNLPSTNAIYQRFGGIDGSAYVVGGFGMTA LTANGIVLVPIQSGIGLRLGANIGYLKFTPSATWNPF
Sequences:
>Translated_197_residues MSFVTRRAALAFVALAALHLPAAAQQQPLPPKSQAGPNTYGPDELVGAGHRFFGNVSRGLASVIERAVSQWGLPNGYVLG EEGSGAFVAGLRYGEGTLYTKNAGDLKVYWQGPSVGFDWGGNGARTMTLVYNLPSTNAIYQRFGGIDGSAYVVGGFGMTA LTANGIVLVPIQSGIGLRLGANIGYLKFTPSATWNPF >Mature_196_residues SFVTRRAALAFVALAALHLPAAAQQQPLPPKSQAGPNTYGPDELVGAGHRFFGNVSRGLASVIERAVSQWGLPNGYVLGE EGSGAFVAGLRYGEGTLYTKNAGDLKVYWQGPSVGFDWGGNGARTMTLVYNLPSTNAIYQRFGGIDGSAYVVGGFGMTAL TANGIVLVPIQSGIGLRLGANIGYLKFTPSATWNPF
Specific function: Unknown
COG id: COG5400
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20630; Mature: 20498
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: PS00449 ATPASE_A
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFVTRRAALAFVALAALHLPAAAQQQPLPPKSQAGPNTYGPDELVGAGHRFFGNVSRGL CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHH ASVIERAVSQWGLPNGYVLGEEGSGAFVAGLRYGEGTLYTKNAGDLKVYWQGPSVGFDWG HHHHHHHHHHCCCCCCEEEECCCCCEEEEEEEECCCEEEECCCCCEEEEECCCCCCCCCC GNGARTMTLVYNLPSTNAIYQRFGGIDGSAYVVGGFGMTALTANGIVLVPIQSGIGLRLG CCCCEEEEEEEECCCCHHHHHHHCCCCCCEEEEECCCEEEEECCCEEEEEECCCCCEEEC ANIGYLKFTPSATWNPF CCCCEEEECCCCCCCCC >Mature Secondary Structure SFVTRRAALAFVALAALHLPAAAQQQPLPPKSQAGPNTYGPDELVGAGHRFFGNVSRGL CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHH ASVIERAVSQWGLPNGYVLGEEGSGAFVAGLRYGEGTLYTKNAGDLKVYWQGPSVGFDWG HHHHHHHHHHCCCCCCEEEECCCCCEEEEEEEECCCEEEECCCCCEEEEECCCCCCCCCC GNGARTMTLVYNLPSTNAIYQRFGGIDGSAYVVGGFGMTALTANGIVLVPIQSGIGLRLG CCCCEEEEEEEECCCCHHHHHHHCCCCCCEEEEECCCEEEEECCCEEEEEECCCCCEEEC ANIGYLKFTPSATWNPF CCCCEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA