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The map label for this gene is ybiS [H]

Identifier: 192290204

GI number: 192290204

Start: 1941716

End: 1942297

Strand: Reverse

Name: ybiS [H]

Synonym: Rpal_1807

Alternate gene names: 192290204

Gene position: 1942297-1941716 (Counterclockwise)

Preceding gene: 192290207

Following gene: 192290203

Centisome position: 33.81

GC content: 68.9

Gene sequence:

>582_bases
ATGGTTCGTCGACTTGCCGCCAGCGCGCTCGCGCTGATCTCGATCGCCACCGCCCTGCCGACCGCCGCTTCGGCGCAGGA
ATTGGACCTGCGCTCGGTGATGGGATTCGGACCGTTCTATCGCTCCGGCCCGAGCGCCAATCCGATCCCACGGGAGACCG
TGATGTTCGAGGGCAACTACGCCCCGGGCACGATCGTCATCAGCACCCGCGAGCGCCGGCTGTACCTAGTCCAGGGCGAC
GGCACCGCGCTGCGCTACGGCATCGGCGTCGGCCGCGACGGCTTCCGCTGGTCGGGCACCCACCGGATCACCGCCAAGCG
TGAGTGGCCGGGCTGGACGCCGCCGGCCCAAATGCTACGCCGCCGCCCCGACCTGCCGCGCTACATGGCGGGTGGCGAGG
ACAATCCGCTCGGCGCCCGGGCGATGTATCTCGGCTCGACGCTGTACCGGATCCACGGCTCCAACGAGCCGGAGACGATC
GGCCAGGCGGTGTCGTCCGGCTGCTTCCGCATGACCAACGACGACGTCAAGGACCTGTACGACCGGGTACGGGTCGGCAC
CGTCGTGGTGGTGAAAAACTAA

Upstream 100 bases:

>100_bases
GGACTGCGGCGAACGCGTGCGCCGACGTACAGCCGCCGGCTTGCGCAATCGCCGCGATTATGGCCAGTTCGGTGCGAAAC
GAAGATTGCGAGGTTTCGGA

Downstream 100 bases:

>100_bases
GGCAGCCGGGCGATCGGCCGCGTGCACAGGCGGCTGCGGCCGAATTGCCGGTTGTGCCCGGGACCGGAATGCGGCAGCCT
TTCGCGATGCACTGCGGCGC

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MVRRLAASALALISIATALPTAASAQELDLRSVMGFGPFYRSGPSANPIPRETVMFEGNYAPGTIVISTRERRLYLVQGD
GTALRYGIGVGRDGFRWSGTHRITAKREWPGWTPPAQMLRRRPDLPRYMAGGEDNPLGARAMYLGSTLYRIHGSNEPETI
GQAVSSGCFRMTNDDVKDLYDRVRVGTVVVVKN

Sequences:

>Translated_193_residues
MVRRLAASALALISIATALPTAASAQELDLRSVMGFGPFYRSGPSANPIPRETVMFEGNYAPGTIVISTRERRLYLVQGD
GTALRYGIGVGRDGFRWSGTHRITAKREWPGWTPPAQMLRRRPDLPRYMAGGEDNPLGARAMYLGSTLYRIHGSNEPETI
GQAVSSGCFRMTNDDVKDLYDRVRVGTVVVVKN
>Mature_193_residues
MVRRLAASALALISIATALPTAASAQELDLRSVMGFGPFYRSGPSANPIPRETVMFEGNYAPGTIVISTRERRLYLVQGD
GTALRYGIGVGRDGFRWSGTHRITAKREWPGWTPPAQMLRRRPDLPRYMAGGEDNPLGARAMYLGSTLYRIHGSNEPETI
GQAVSSGCFRMTNDDVKDLYDRVRVGTVVVVKN

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=180, Percent_Identity=34.4444444444444, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1788299, Length=136, Percent_Identity=39.7058823529412, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1787968, Length=137, Percent_Identity=38.6861313868613, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI1787356, Length=175, Percent_Identity=34.2857142857143, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 21204; Mature: 21204

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRRLAASALALISIATALPTAASAQELDLRSVMGFGPFYRSGPSANPIPRETVMFEGNY
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCCCCEEEEECCC
APGTIVISTRERRLYLVQGDGTALRYGIGVGRDGFRWSGTHRITAKREWPGWTPPAQMLR
CCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCEECCCEEEEEECCCCCCCCHHHHHH
RRPDLPRYMAGGEDNPLGARAMYLGSTLYRIHGSNEPETIGQAVSSGCFRMTNDDVKDLY
CCCCCCHHHCCCCCCCCCHHHHHHCCEEEEEECCCCHHHHHHHHHCCCEECCCCHHHHHH
DRVRVGTVVVVKN
HHHHCCEEEEEEC
>Mature Secondary Structure
MVRRLAASALALISIATALPTAASAQELDLRSVMGFGPFYRSGPSANPIPRETVMFEGNY
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCCCCEEEEECCC
APGTIVISTRERRLYLVQGDGTALRYGIGVGRDGFRWSGTHRITAKREWPGWTPPAQMLR
CCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCEECCCEEEEEECCCCCCCCHHHHHH
RRPDLPRYMAGGEDNPLGARAMYLGSTLYRIHGSNEPETIGQAVSSGCFRMTNDDVKDLY
CCCCCCHHHCCCCCCCCCHHHHHHCCEEEEEECCCCHHHHHHHHHCCCEECCCCHHHHHH
DRVRVGTVVVVKN
HHHHCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]