| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192290203
Identifier: 192290203
GI number: 192290203
Start: 1940823
End: 1941647
Strand: Reverse
Name: 192290203
Synonym: Rpal_1806
Alternate gene names: NA
Gene position: 1941647-1940823 (Counterclockwise)
Preceding gene: 192290204
Following gene: 192290200
Centisome position: 33.8
GC content: 65.7
Gene sequence:
>825_bases ATGCGGCAGCCTTTCGCGATGCACTGCGGCGCCCGGCATCTCCGACCTGCACTCGCGGCGGTTACCGCCGCGATCACGCT CCTCGCCACGGCGCCAGCCAGCGCCGCCGAAGCGACCGACTTCTCCGCCACCCAGCGCAGCGAGAAGACCGACTTCACCG ACAGCCAGATCGCCGACGGTTTCTTCCGCACCGCGTTCGGCGCCGAATTCCACATGGCGGGGCGGGTCGACCGGATCCGC AAATACGAGGCCCCGGTGCGGGTCTATGCCGAAGGCGACGGCCAGGCGCATCGCCGCGCCGAACTCGCCCGGATCGTCTC GGACATCGCCGGCCGAGTCGAGCATCTCGACATCGCGATGACCGACAATCCGGACGAGGCCAACGTCACCGTCCACCTCG TCCGCGACCGCAACCTCGGCAAGACCATCGCGACGTTCTACGGCGAGGAACGCGCCCGCGAGATCCGCGAGAGCCTCGAT CCGCAGTGCCTGTCCGGCTTCCGCAAGAACGACCGCTTCGAGATCGAGCGCTCCGACGTCATCCTCACCATCGACAACGG CGACTTCGTTTTCCGCGACTGCGCCTATGAGGAACTGCTGCAGTCGCTCGGCCCGATCAACGACACCGACAACGTGCCGT GGACGATGTTCAACGACGACGTCCAGAAGGGCTATTTCGACGTCTACGATCAGTACCTGTTGAACATCCTGTACCACCCG GCGATCCGCCCCGGCATGACCGTGCCGGAAGTCAAAGCCGTGCTCCCCCAGGTCCTCGCCGACGTGCGCAGCTATGTCGC GAAGGTGAACAGGCTGACGCGTTAA
Upstream 100 bases:
>100_bases GGGTCGGCACCGTCGTGGTGGTGAAAAACTAAGGCAGCCGGGCGATCGGCCGCGTGCACAGGCGGCTGCGGCCGAATTGC CGGTTGTGCCCGGGACCGGA
Downstream 100 bases:
>100_bases GGCGTCGTCGGACGCTTCGCCAACACGTGCAAAAAGATCGGAGCGACCCGGGTGTCCGCGACGATCGGTTCGGCCGCCGC AACCTCTTCCGAGGCCCTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MRQPFAMHCGARHLRPALAAVTAAITLLATAPASAAEATDFSATQRSEKTDFTDSQIADGFFRTAFGAEFHMAGRVDRIR KYEAPVRVYAEGDGQAHRRAELARIVSDIAGRVEHLDIAMTDNPDEANVTVHLVRDRNLGKTIATFYGEERAREIRESLD PQCLSGFRKNDRFEIERSDVILTIDNGDFVFRDCAYEELLQSLGPINDTDNVPWTMFNDDVQKGYFDVYDQYLLNILYHP AIRPGMTVPEVKAVLPQVLADVRSYVAKVNRLTR
Sequences:
>Translated_274_residues MRQPFAMHCGARHLRPALAAVTAAITLLATAPASAAEATDFSATQRSEKTDFTDSQIADGFFRTAFGAEFHMAGRVDRIR KYEAPVRVYAEGDGQAHRRAELARIVSDIAGRVEHLDIAMTDNPDEANVTVHLVRDRNLGKTIATFYGEERAREIRESLD PQCLSGFRKNDRFEIERSDVILTIDNGDFVFRDCAYEELLQSLGPINDTDNVPWTMFNDDVQKGYFDVYDQYLLNILYHP AIRPGMTVPEVKAVLPQVLADVRSYVAKVNRLTR >Mature_274_residues MRQPFAMHCGARHLRPALAAVTAAITLLATAPASAAEATDFSATQRSEKTDFTDSQIADGFFRTAFGAEFHMAGRVDRIR KYEAPVRVYAEGDGQAHRRAELARIVSDIAGRVEHLDIAMTDNPDEANVTVHLVRDRNLGKTIATFYGEERAREIRESLD PQCLSGFRKNDRFEIERSDVILTIDNGDFVFRDCAYEELLQSLGPINDTDNVPWTMFNDDVQKGYFDVYDQYLLNILYHP AIRPGMTVPEVKAVLPQVLADVRSYVAKVNRLTR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30828; Mature: 30828
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQPFAMHCGARHLRPALAAVTAAITLLATAPASAAEATDFSATQRSEKTDFTDSQIADG CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHCCCCCCCCHHHHHHH FFRTAFGAEFHMAGRVDRIRKYEAPVRVYAEGDGQAHRRAELARIVSDIAGRVEHLDIAM HHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHEEEEE TDNPDEANVTVHLVRDRNLGKTIATFYGEERAREIRESLDPQCLSGFRKNDRFEIERSDV CCCCCCCCEEEEEEECCCCCHHHHHHHCHHHHHHHHHCCCHHHHHHCCCCCCEEEECCCE ILTIDNGDFVFRDCAYEELLQSLGPINDTDNVPWTMFNDDVQKGYFDVYDQYLLNILYHP EEEECCCCEEEHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCC AIRPGMTVPEVKAVLPQVLADVRSYVAKVNRLTR CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MRQPFAMHCGARHLRPALAAVTAAITLLATAPASAAEATDFSATQRSEKTDFTDSQIADG CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHCCCCCCCCHHHHHHH FFRTAFGAEFHMAGRVDRIRKYEAPVRVYAEGDGQAHRRAELARIVSDIAGRVEHLDIAM HHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHEEEEE TDNPDEANVTVHLVRDRNLGKTIATFYGEERAREIRESLDPQCLSGFRKNDRFEIERSDV CCCCCCCCEEEEEEECCCCCHHHHHHHCHHHHHHHHHCCCHHHHHHCCCCCCEEEECCCE ILTIDNGDFVFRDCAYEELLQSLGPINDTDNVPWTMFNDDVQKGYFDVYDQYLLNILYHP EEEECCCCEEEHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCC AIRPGMTVPEVKAVLPQVLADVRSYVAKVNRLTR CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA