| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192290192
Identifier: 192290192
GI number: 192290192
Start: 1928123
End: 1929376
Strand: Reverse
Name: 192290192
Synonym: Rpal_1795
Alternate gene names: NA
Gene position: 1929376-1928123 (Counterclockwise)
Preceding gene: 192290196
Following gene: 192290191
Centisome position: 33.59
GC content: 66.99
Gene sequence:
>1254_bases GTGACGATTTTGTCCTCCGCCGCAAGCGCTGCAGCCGAATCTTCCACATCGTCCGTCTCCGCCCGCGATTTGGCCGCCCA GCTCGCCACCGCCTATCGGGCGGTCCGCGACGAGACCGAGCGCCGCGCGGCGCCGCTGTCGCCGGAAGATCAGGTGGTGC AGTCGATGCCGGACGCCAGCCCGGCGAAGTGGCACCGCGCCCACACCACCTGGTTCTTCGAGCAGTTCCTGCTCGGCCTG CATTGTCCCGGCTATCAGGTGTTCCACCCGGACTACGCTTTCCTGTTCAATTCCTATTACGTCTCGGCCGGGCCGCGGCA CACCCGCGCCGCGCGCGGCCTGCTCACCCGCCCCGGCGTCGCCGAGATTGCGGCCTATCGCCGCCACGTCGATGAAGCGA TGCTGAACTGGTTCGCCACCGCCGATGCTGCGAAGCTCGAGGAGGTCGCGCCGCTGATCGAGGTCGGGCTCAATCACGAG CAGCAGCACCAGGAATTGCTGCTCACCGACATCCTCCATGCCTTTGCGCAAAATCCGATCCCGCCGGCCTACGACCCGGC GTGGCGGCTGCCGACAACGGACCATCACGGTGAGGACTGGGTGACGCTGCCGGAGGGCATCCACCCGATCGGTCATGCCG GCGACAGCTTTCATTTCGACAACGAAAAACCGGTGCACCGCGCGCTGGTGGGACCGGTCAGACTGGCCCGGCACCTCGTC ACCAATGCCGAGTGGCTGCAGTTCATGGCCGAGGGCGGCTATCGCACCGCCACGCTGTGGCTGATGGACGGCTTCGCATG CGCCGAGCGTGAAGGCTGGGAGGCGCCCGGCCACTGGCGGCAGGTGGACGGCGAATGGAAGATCATGACGCTCGGCGGCC TGCAGAGCATCGATCCCGACGCCCCCGTCTGCCACGTCAGCTACTACGAGGCCGACGCCTTCGTCCGCTGGGCCGGCAAG CATCTGCCGACCGAAATGGAATGGGAGGTCGCGGCGCGCGCCGGGCAGCTTCCCGATGCCTTTGGCGCCGTCTGGCAATG GACCCGCAGCGCCTATGCGCCCTACCCCGGCTACAAGGCGATCGACGGCGCGCTCGGCGAATACAACGGCAAGTTCATGG TCAATCAGCTGGTGCTGCGCGGCTCGTCCTGCGCAACGCCTGAAGGCCACAGCCGCGTCACCTATCGCAATTTCTTCTAT CCGCATCACCGCTGGCAGTTCACCGGACTGCGGCTCGCCGACTACGGCGCCTGA
Upstream 100 bases:
>100_bases CCGGTACGCCGCCGACCTTACATCCGGGTCGCCAGCCCCTACTTGATCCTCTGGAACTCATTCCCAACAGCAGCGTTTTT CCACCAAACCGGAGATGCTC
Downstream 100 bases:
>100_bases TTTGAACATCTAAACGCGCCAAGCGCGCGGCCGGAGGATCGCCTATGAACGTGCACGTCGCTGTGCAGACGCAAGCGCAT CGGCTCGATTCCAACACGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 417; Mature: 416
Protein sequence:
>417_residues MTILSSAASAAAESSTSSVSARDLAAQLATAYRAVRDETERRAAPLSPEDQVVQSMPDASPAKWHRAHTTWFFEQFLLGL HCPGYQVFHPDYAFLFNSYYVSAGPRHTRAARGLLTRPGVAEIAAYRRHVDEAMLNWFATADAAKLEEVAPLIEVGLNHE QQHQELLLTDILHAFAQNPIPPAYDPAWRLPTTDHHGEDWVTLPEGIHPIGHAGDSFHFDNEKPVHRALVGPVRLARHLV TNAEWLQFMAEGGYRTATLWLMDGFACAEREGWEAPGHWRQVDGEWKIMTLGGLQSIDPDAPVCHVSYYEADAFVRWAGK HLPTEMEWEVAARAGQLPDAFGAVWQWTRSAYAPYPGYKAIDGALGEYNGKFMVNQLVLRGSSCATPEGHSRVTYRNFFY PHHRWQFTGLRLADYGA
Sequences:
>Translated_417_residues MTILSSAASAAAESSTSSVSARDLAAQLATAYRAVRDETERRAAPLSPEDQVVQSMPDASPAKWHRAHTTWFFEQFLLGL HCPGYQVFHPDYAFLFNSYYVSAGPRHTRAARGLLTRPGVAEIAAYRRHVDEAMLNWFATADAAKLEEVAPLIEVGLNHE QQHQELLLTDILHAFAQNPIPPAYDPAWRLPTTDHHGEDWVTLPEGIHPIGHAGDSFHFDNEKPVHRALVGPVRLARHLV TNAEWLQFMAEGGYRTATLWLMDGFACAEREGWEAPGHWRQVDGEWKIMTLGGLQSIDPDAPVCHVSYYEADAFVRWAGK HLPTEMEWEVAARAGQLPDAFGAVWQWTRSAYAPYPGYKAIDGALGEYNGKFMVNQLVLRGSSCATPEGHSRVTYRNFFY PHHRWQFTGLRLADYGA >Mature_416_residues TILSSAASAAAESSTSSVSARDLAAQLATAYRAVRDETERRAAPLSPEDQVVQSMPDASPAKWHRAHTTWFFEQFLLGLH CPGYQVFHPDYAFLFNSYYVSAGPRHTRAARGLLTRPGVAEIAAYRRHVDEAMLNWFATADAAKLEEVAPLIEVGLNHEQ QHQELLLTDILHAFAQNPIPPAYDPAWRLPTTDHHGEDWVTLPEGIHPIGHAGDSFHFDNEKPVHRALVGPVRLARHLVT NAEWLQFMAEGGYRTATLWLMDGFACAEREGWEAPGHWRQVDGEWKIMTLGGLQSIDPDAPVCHVSYYEADAFVRWAGKH LPTEMEWEVAARAGQLPDAFGAVWQWTRSAYAPYPGYKAIDGALGEYNGKFMVNQLVLRGSSCATPEGHSRVTYRNFFYP HHRWQFTGLRLADYGA
Specific function: Unknown
COG id: COG1262
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46702; Mature: 46570
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTILSSAASAAAESSTSSVSARDLAAQLATAYRAVRDETERRAAPLSPEDQVVQSMPDAS CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCC PAKWHRAHTTWFFEQFLLGLHCPGYQVFHPDYAFLFNSYYVSAGPRHTRAARGLLTRPGV CHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCEEECCCCCHHHHHHCCCCCCCH AEIAAYRRHVDEAMLNWFATADAAKLEEVAPLIEVGLNHEQQHQELLLTDILHAFAQNPI HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC PPAYDPAWRLPTTDHHGEDWVTLPEGIHPIGHAGDSFHFDNEKPVHRALVGPVRLARHLV CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH TNAEWLQFMAEGGYRTATLWLMDGFACAEREGWEAPGHWRQVDGEWKIMTLGGLQSIDPD CCHHHHHHHHCCCCEEEEEEEECCHHHHCCCCCCCCCCCEECCCCEEEEEECCCCCCCCC APVCHVSYYEADAFVRWAGKHLPTEMEWEVAARAGQLPDAFGAVWQWTRSAYAPYPGYKA CCEEEEEEECHHHHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHH IDGALGEYNGKFMVNQLVLRGSSCATPEGHSRVTYRNFFYPHHRWQFTGLRLADYGA HCCCHHCCCCCEEEHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEECCEEECCCCC >Mature Secondary Structure TILSSAASAAAESSTSSVSARDLAAQLATAYRAVRDETERRAAPLSPEDQVVQSMPDAS CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCC PAKWHRAHTTWFFEQFLLGLHCPGYQVFHPDYAFLFNSYYVSAGPRHTRAARGLLTRPGV CHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCEEECCCCCHHHHHHCCCCCCCH AEIAAYRRHVDEAMLNWFATADAAKLEEVAPLIEVGLNHEQQHQELLLTDILHAFAQNPI HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC PPAYDPAWRLPTTDHHGEDWVTLPEGIHPIGHAGDSFHFDNEKPVHRALVGPVRLARHLV CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH TNAEWLQFMAEGGYRTATLWLMDGFACAEREGWEAPGHWRQVDGEWKIMTLGGLQSIDPD CCHHHHHHHHCCCCEEEEEEEECCHHHHCCCCCCCCCCCEECCCCEEEEEECCCCCCCCC APVCHVSYYEADAFVRWAGKHLPTEMEWEVAARAGQLPDAFGAVWQWTRSAYAPYPGYKA CCEEEEEEECHHHHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHH IDGALGEYNGKFMVNQLVLRGSSCATPEGHSRVTYRNFFYPHHRWQFTGLRLADYGA HCCCHHCCCCCEEEHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEECCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA