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The map label for this gene is cbbR [H]

Identifier: 192290141

GI number: 192290141

Start: 1869189

End: 1870157

Strand: Reverse

Name: cbbR [H]

Synonym: Rpal_1743

Alternate gene names: 192290141

Gene position: 1870157-1869189 (Counterclockwise)

Preceding gene: 192290148

Following gene: 192290126

Centisome position: 32.56

GC content: 68.73

Gene sequence:

>969_bases
ATGAGCCGACAGTTCAAAACCGTCTCGATTCGCCAGCTTCGCGCGCTGGCGGCACTGGCCGAGACCGGCAGCATCACGGC
GGCGGCCGGCAAGCTGAACCTGACCCAGCCGGCGGTGACGCTGCAGCTCCGCAATCTGCAGGCGCTGGCCGATCTGCCGC
TGATCCAGCGCAGCAATGACGGGATGCGGCTGACCGACGCCGGGCGCGAGGTGCTGGCGCTCAGCGAGCGGATCGAGGCG
GCAATCGCGGCCTGCGAGACCTCGCTGGAGATGATCGCCGGCAAGACGGCGGGGCGGATTTCGATCGGTGCGGTGTCGAC
CGCAAAGTACTTCGTGCCGTTCGCGATCTCCGGCTTCCTCAAGCGCCATCCGAAGATCGACGTGCACCTGTCGATCGGCA
ACCGCCAGGAGATCGGCGCGGAGCTGCGCAACTACGAGCTCGACATCGCCATCATGGGGCGTCCACCGGTCGACCTCGAA
GTCGACGTCCACCTGATCGGCGACCACCCCCACGTCATCATCGCCCCGACCGCGCACCGGCTGGCGCGCAAGGACAACAT
CGCGCCGCGCGAGCTGGCGAACGAGACCTTCGTCACCCGCGAGCCAGGCTCCGGCACCCGCAGCCTGATGGAGCAGTTCT
TCGGCGGCGCCGGGATCAGCCCGCCGATCGGCATGGAGATGAGCAGCAACGAGACCATCAAGCAGGCGGTGATCGCCGGG
CTCGGCGTCGCTTTCATCTCCGCCCACACCGTCGCCACCGAGCTCGACGAGCGGCGGCTGGTGATCCTCGATGTCGAGGG
GCTGCCGGTGGTGCGGCAGTGGTTCGTGGTCAGCCGCAAGGACAAGGTGCTGCTGCCGCCCGCGCGGGCGATGCTCGAGT
TCATCAAGGCCGAGGGCTCACACTTCCTGCCGCGCACCCATGGCCGGATGCGCCTGACCCGGCCGTCGCCGCGCGGCAAG
CGGGGCTGA

Upstream 100 bases:

>100_bases
CCCTTAAGGCCCGGAGCAGAGGTGCCCCCCTGCTCCAGGTTGACCCTCTCTGGCGAATAGCCGACAGTTCGCAATCGTCC
CCGCACGCCGTGTTTGTTTG

Downstream 100 bases:

>100_bases
ACGGAGGGGGCCGGCAGTTCTGATCCGCTGAGCCCGGCCTTCCGCCGTCGCAGATTTCTGAGGCTCGGCTATGCCGAAAC
GCCCCCTCACCCGGATTGCT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: RuBisCO operon transcriptional regulator [H]

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MSRQFKTVSIRQLRALAALAETGSITAAAGKLNLTQPAVTLQLRNLQALADLPLIQRSNDGMRLTDAGREVLALSERIEA
AIAACETSLEMIAGKTAGRISIGAVSTAKYFVPFAISGFLKRHPKIDVHLSIGNRQEIGAELRNYELDIAIMGRPPVDLE
VDVHLIGDHPHVIIAPTAHRLARKDNIAPRELANETFVTREPGSGTRSLMEQFFGGAGISPPIGMEMSSNETIKQAVIAG
LGVAFISAHTVATELDERRLVILDVEGLPVVRQWFVVSRKDKVLLPPARAMLEFIKAEGSHFLPRTHGRMRLTRPSPRGK
RG

Sequences:

>Translated_322_residues
MSRQFKTVSIRQLRALAALAETGSITAAAGKLNLTQPAVTLQLRNLQALADLPLIQRSNDGMRLTDAGREVLALSERIEA
AIAACETSLEMIAGKTAGRISIGAVSTAKYFVPFAISGFLKRHPKIDVHLSIGNRQEIGAELRNYELDIAIMGRPPVDLE
VDVHLIGDHPHVIIAPTAHRLARKDNIAPRELANETFVTREPGSGTRSLMEQFFGGAGISPPIGMEMSSNETIKQAVIAG
LGVAFISAHTVATELDERRLVILDVEGLPVVRQWFVVSRKDKVLLPPARAMLEFIKAEGSHFLPRTHGRMRLTRPSPRGK
RG
>Mature_321_residues
SRQFKTVSIRQLRALAALAETGSITAAAGKLNLTQPAVTLQLRNLQALADLPLIQRSNDGMRLTDAGREVLALSERIEAA
IAACETSLEMIAGKTAGRISIGAVSTAKYFVPFAISGFLKRHPKIDVHLSIGNRQEIGAELRNYELDIAIMGRPPVDLEV
DVHLIGDHPHVIIAPTAHRLARKDNIAPRELANETFVTREPGSGTRSLMEQFFGGAGISPPIGMEMSSNETIKQAVIAGL
GVAFISAHTVATELDERRLVILDVEGLPVVRQWFVVSRKDKVLLPPARAMLEFIKAEGSHFLPRTHGRMRLTRPSPRGKR
G

Specific function: Transcriptional activator for the cbb operon (cbbLSXFP) for RuBisCO and other Calvin cycle genes. Binds specifically to two binding sites in the cbbR-cbbL intergenic region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=284, Percent_Identity=29.5774647887324, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1788481, Length=293, Percent_Identity=26.962457337884, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI157672245, Length=220, Percent_Identity=28.1818181818182, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790262, Length=329, Percent_Identity=24.9240121580547, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788887, Length=252, Percent_Identity=27.7777777777778, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787530, Length=249, Percent_Identity=26.5060240963855, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788748, Length=303, Percent_Identity=24.0924092409241, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI145693105, Length=282, Percent_Identity=26.5957446808511, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787601, Length=298, Percent_Identity=22.8187919463087, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787806, Length=269, Percent_Identity=26.0223048327138, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI2367136, Length=253, Percent_Identity=26.0869565217391, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1790399, Length=252, Percent_Identity=25.7936507936508, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87081904, Length=293, Percent_Identity=24.9146757679181, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI87082132, Length=266, Percent_Identity=25.187969924812, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=24.1803278688525, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35059; Mature: 34928

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRQFKTVSIRQLRALAALAETGSITAAAGKLNLTQPAVTLQLRNLQALADLPLIQRSND
CCCCEEEHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEECCHHHHHCCCCEEECCC
GMRLTDAGREVLALSERIEAAIAACETSLEMIAGKTAGRISIGAVSTAKYFVPFAISGFL
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHH
KRHPKIDVHLSIGNRQEIGAELRNYELDIAIMGRPPVDLEVDVHLIGDHPHVIIAPTAHR
HHCCCEEEEEEECCHHHHHHHHHCEEEEEEEECCCCCCEEEEEEEECCCCEEEECCCHHH
LARKDNIAPRELANETFVTREPGSGTRSLMEQFFGGAGISPPIGMEMSSNETIKQAVIAG
HHHHCCCCHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
LGVAFISAHTVATELDERRLVILDVEGLPVVRQWFVVSRKDKVLLPPARAMLEFIKAEGS
HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHEECCCCCEECCCHHHHHHHHHCCCC
HFLPRTHGRMRLTRPSPRGKRG
CCCCCCCCCEEEECCCCCCCCC
>Mature Secondary Structure 
SRQFKTVSIRQLRALAALAETGSITAAAGKLNLTQPAVTLQLRNLQALADLPLIQRSND
CCCEEEHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEECCHHHHHCCCCEEECCC
GMRLTDAGREVLALSERIEAAIAACETSLEMIAGKTAGRISIGAVSTAKYFVPFAISGFL
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHH
KRHPKIDVHLSIGNRQEIGAELRNYELDIAIMGRPPVDLEVDVHLIGDHPHVIIAPTAHR
HHCCCEEEEEEECCHHHHHHHHHCEEEEEEEECCCCCCEEEEEEEECCCCEEEECCCHHH
LARKDNIAPRELANETFVTREPGSGTRSLMEQFFGGAGISPPIGMEMSSNETIKQAVIAG
HHHHCCCCHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
LGVAFISAHTVATELDERRLVILDVEGLPVVRQWFVVSRKDKVLLPPARAMLEFIKAEGS
HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHEECCCCCEECCCHHHHHHHHHCCCC
HFLPRTHGRMRLTRPSPRGKRG
CCCCCCCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8407781; 1900916 [H]