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The map label for this gene is flgD [H]

Identifier: 192289902

GI number: 192289902

Start: 1576295

End: 1577008

Strand: Reverse

Name: flgD [H]

Synonym: Rpal_1494

Alternate gene names: 192289902

Gene position: 1577008-1576295 (Counterclockwise)

Preceding gene: 192289903

Following gene: 192289900

Centisome position: 27.45

GC content: 61.9

Gene sequence:

>714_bases
ATGTCCGTCGATTCCACAACCGCGACTACGCCGTACTCGGCCCCAAATCCGAACTACTCCGCCGACAGCGCCAAGTCCAA
GACCAGCTCGACCCCGGGCATCGCGGACAATTTCCAGACCTTCCTGACGCTGCTGACGACGCAGCTCAAGAACCAGAACC
CGACCGACCCGCTGGACACCAACCAGTTCACCCAGCAGTTGGTGCAGTTCGCCGGCATCGAGCAGCAGCTCAAGACAAAC
GACTCGCTGAGCTCCCTGGTGCAGCTGCAGACCACCGCACAGGCGACACAAGCGATGAGCCTCGTCGGCGCCAACGCCAT
CGTCGACGGCAGCAAGGTGCAGATGACCAAAGGCAATGCGATCTGGTCGTTGTCGACCGACAAGCCGGTCAGCGCCCAGG
TTTCGATTCAGAGCGACACCGGCCAGACGGTGTATTCCGGCAAGTTCACCATCAATGCCGGCAAGGATCAGGCGTTCAAA
TGGGACGGCCGCGGCAACGACGGCACTCAATGGCCGGACGGCAACTACAAGCTGTCGATCGTCGCCACCGACGCGTCGGG
GAAGACCGCCACGGTCTCCACCCAGATCCAGGGCACGATCGACTCCGTCGATCTCACCCAGACCCCGCCAAAACTGTCGA
TCGGCGGCCAGAATTTCTCGCTCGACCAGATCAACAAGCTGGTCCGGGCCAACAGCACCGCCACCTCGATGTGA

Upstream 100 bases:

>100_bases
GCAGGACGAACTGCCGCCCACGCCGGTCGCGAGCCGCGGCTACGGCCGCATGCTCGGTGCGAGCGGCGGCGTCGATATTC
GAATCTGAGGAGCAACGCGC

Downstream 100 bases:

>100_bases
CGGTGCCGCGCGCCCGGATTAGCCGGGCGCTTACTGCTCGATCAGCTTGTCGGCGAAGTAAGCGATCGTCTTGCGATACA
CCAGCGCGCGATTCCACTCG

Product: flagellar hook capping protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MSVDSTTATTPYSAPNPNYSADSAKSKTSSTPGIADNFQTFLTLLTTQLKNQNPTDPLDTNQFTQQLVQFAGIEQQLKTN
DSLSSLVQLQTTAQATQAMSLVGANAIVDGSKVQMTKGNAIWSLSTDKPVSAQVSIQSDTGQTVYSGKFTINAGKDQAFK
WDGRGNDGTQWPDGNYKLSIVATDASGKTATVSTQIQGTIDSVDLTQTPPKLSIGGQNFSLDQINKLVRANSTATSM

Sequences:

>Translated_237_residues
MSVDSTTATTPYSAPNPNYSADSAKSKTSSTPGIADNFQTFLTLLTTQLKNQNPTDPLDTNQFTQQLVQFAGIEQQLKTN
DSLSSLVQLQTTAQATQAMSLVGANAIVDGSKVQMTKGNAIWSLSTDKPVSAQVSIQSDTGQTVYSGKFTINAGKDQAFK
WDGRGNDGTQWPDGNYKLSIVATDASGKTATVSTQIQGTIDSVDLTQTPPKLSIGGQNFSLDQINKLVRANSTATSM
>Mature_236_residues
SVDSTTATTPYSAPNPNYSADSAKSKTSSTPGIADNFQTFLTLLTTQLKNQNPTDPLDTNQFTQQLVQFAGIEQQLKTND
SLSSLVQLQTTAQATQAMSLVGANAIVDGSKVQMTKGNAIWSLSTDKPVSAQVSIQSDTGQTVYSGKFTINAGKDQAFKW
DGRGNDGTQWPDGNYKLSIVATDASGKTATVSTQIQGTIDSVDLTQTPPKLSIGGQNFSLDQINKLVRANSTATSM

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=160, Percent_Identity=31.875, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 25113; Mature: 24982

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVDSTTATTPYSAPNPNYSADSAKSKTSSTPGIADNFQTFLTLLTTQLKNQNPTDPLDT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCH
NQFTQQLVQFAGIEQQLKTNDSLSSLVQLQTTAQATQAMSLVGANAIVDGSKVQMTKGNA
HHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCE
IWSLSTDKPVSAQVSIQSDTGQTVYSGKFTINAGKDQAFKWDGRGNDGTQWPDGNYKLSI
EEEECCCCCCEEEEEEECCCCCEEEECEEEEECCCCCEEEECCCCCCCCCCCCCCEEEEE
VATDASGKTATVSTQIQGTIDSVDLTQTPPKLSIGGQNFSLDQINKLVRANSTATSM
EEECCCCCEEEEEEEEECCCCCEECCCCCCCEEECCCCCCHHHHHHHHHCCCHHCCC
>Mature Secondary Structure 
SVDSTTATTPYSAPNPNYSADSAKSKTSSTPGIADNFQTFLTLLTTQLKNQNPTDPLDT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCH
NQFTQQLVQFAGIEQQLKTNDSLSSLVQLQTTAQATQAMSLVGANAIVDGSKVQMTKGNA
HHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCE
IWSLSTDKPVSAQVSIQSDTGQTVYSGKFTINAGKDQAFKWDGRGNDGTQWPDGNYKLSI
EEEECCCCCCEEEEEEECCCCCEEEECEEEEECCCCCEEEECCCCCCCCCCCCCCEEEEE
VATDASGKTATVSTQIQGTIDSVDLTQTPPKLSIGGQNFSLDQINKLVRANSTATSM
EEECCCCCEEEEEEEEECCCCCEECCCCCCCEEECCCCCCHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]