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The map label for this gene is yngJ [H]

Identifier: 192289840

GI number: 192289840

Start: 1510749

End: 1511885

Strand: Reverse

Name: yngJ [H]

Synonym: Rpal_1430

Alternate gene names: 192289840

Gene position: 1511885-1510749 (Counterclockwise)

Preceding gene: 192289841

Following gene: 192289839

Centisome position: 26.32

GC content: 67.72

Gene sequence:

>1137_bases
ATGGATCTCACGCCCAGTGACGAACAACGGCTGCTGCGCGAAAGCGCCGACCGCTTCATCGCCGAGACCTACACGACGAA
GCTGCGCGAGCAGAACGCCAAGGAGCCGTTCGGCTTCAGCGAAGCAATCTGGAAGCAGTTCGCCGATCTCGGCTGGTTGG
CGCTGCCGCTGCCCGAACAGCATGGCGGCATCGGCGGCGGCGCGATCGAAGTCAGCATCCTGATGGAAGCGTTCGGCCGC
GGCCTGGTCAGCGAGCCGTATCTGTCGACCGTGGTGCTCGGCGCCGGCCTCGTCGCCGAACACGGCCGCGACGAGCAGAA
GGCGGCGCTGCTGCCGCAGATCGCGGAAGGAATGTTGCGGCTCGCTTTCGCGCATACAGAACGCGCCGCGCGCGCGGATC
TATCGCGCGTCGACACCACCGCGCGCAAAGACGGCGATCACTATGTGCTCGACGGCGCCAAAGTTGCGGTGCTGGACGGC
GCGTCGGCCGATCAACTGATCGTCTCGGCGCGCTTGGCGAACAACGGCAGCGGCTCGCTGCGGCTGTTCCTGGTGCCGTG
CGACGCGGCGGGGCTATCGCTCGCCGACTATCCGCGGCTCGGTGGCGGACGGGCATGCAATCTGACGCTGCAAGGCGTGC
GCGTCCCGGCCGACGCGATGCTCGGCACTGACAGCGATGCGTATCCGGCGGTCGAGGCCGTGGTCGATCGCGCCCTCGCG
GCGATGTCGGCCGAAGCGGTCGGCATGATGCAGACGCTGACCGACAAGACGCTCGACTACACCAAAGTTCGAAAACAGTT
CGGCCGGCCGCTCGCCGCCAACCAGGTGGTGCGGCATCGGCTGACCGACATGTCGGTGCAGGTCGACGAAGCCCGCTCGA
TGGCGCTGCGTGCGGCTCTGAAGGCGGATGCCGAGGGTACCGAGCGTGGCCGCGCCGCCTCCGGCGCCAAGGCCAAGATC
GGCAAGGGCGCACGCTTCGTCGCCGAGCAGTCGGTGCAGCTTCACGGCGGCATGGGCGTCACCGAGGAACTCGACGTCGG
CGCATATTTCAAACGCCTGCTGGCGTTCGAGACGCTGTTCGGCGGCAGCACCCATCATTATCGCCGCCACGCCGCGCTCA
GCGGCCGGCCTGTTTAA

Upstream 100 bases:

>100_bases
GCATCAGCTTTGTCACGCTCACAATCTGCAGGAGTTTGGAATGATCGTCGATCCGTCGGGACTGCATCCGTCGGTGCGCA
AGCAAGTAAAGGTGTAAGCG

Downstream 100 bases:

>100_bases
GCAAAGCGAGGCATCGACATGGACATGACCTTCGGCGACGCCGAGCTCGCCTTCCAGCAAGAGGTCCGCGATTTCATCGC
GGCGAATCTGACGCCCGACA

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MDLTPSDEQRLLRESADRFIAETYTTKLREQNAKEPFGFSEAIWKQFADLGWLALPLPEQHGGIGGGAIEVSILMEAFGR
GLVSEPYLSTVVLGAGLVAEHGRDEQKAALLPQIAEGMLRLAFAHTERAARADLSRVDTTARKDGDHYVLDGAKVAVLDG
ASADQLIVSARLANNGSGSLRLFLVPCDAAGLSLADYPRLGGGRACNLTLQGVRVPADAMLGTDSDAYPAVEAVVDRALA
AMSAEAVGMMQTLTDKTLDYTKVRKQFGRPLAANQVVRHRLTDMSVQVDEARSMALRAALKADAEGTERGRAASGAKAKI
GKGARFVAEQSVQLHGGMGVTEELDVGAYFKRLLAFETLFGGSTHHYRRHAALSGRPV

Sequences:

>Translated_378_residues
MDLTPSDEQRLLRESADRFIAETYTTKLREQNAKEPFGFSEAIWKQFADLGWLALPLPEQHGGIGGGAIEVSILMEAFGR
GLVSEPYLSTVVLGAGLVAEHGRDEQKAALLPQIAEGMLRLAFAHTERAARADLSRVDTTARKDGDHYVLDGAKVAVLDG
ASADQLIVSARLANNGSGSLRLFLVPCDAAGLSLADYPRLGGGRACNLTLQGVRVPADAMLGTDSDAYPAVEAVVDRALA
AMSAEAVGMMQTLTDKTLDYTKVRKQFGRPLAANQVVRHRLTDMSVQVDEARSMALRAALKADAEGTERGRAASGAKAKI
GKGARFVAEQSVQLHGGMGVTEELDVGAYFKRLLAFETLFGGSTHHYRRHAALSGRPV
>Mature_378_residues
MDLTPSDEQRLLRESADRFIAETYTTKLREQNAKEPFGFSEAIWKQFADLGWLALPLPEQHGGIGGGAIEVSILMEAFGR
GLVSEPYLSTVVLGAGLVAEHGRDEQKAALLPQIAEGMLRLAFAHTERAARADLSRVDTTARKDGDHYVLDGAKVAVLDG
ASADQLIVSARLANNGSGSLRLFLVPCDAAGLSLADYPRLGGGRACNLTLQGVRVPADAMLGTDSDAYPAVEAVVDRALA
AMSAEAVGMMQTLTDKTLDYTKVRKQFGRPLAANQVVRHRLTDMSVQVDEARSMALRAALKADAEGTERGRAASGAKAKI
GKGARFVAEQSVQLHGGMGVTEELDVGAYFKRLLAFETLFGGSTHHYRRHAALSGRPV

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=372, Percent_Identity=28.494623655914, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI4557233, Length=356, Percent_Identity=30.6179775280899, Blast_Score=136, Evalue=3e-32,
Organism=Homo sapiens, GI226958414, Length=337, Percent_Identity=28.1899109792285, Blast_Score=128, Evalue=9e-30,
Organism=Homo sapiens, GI4501859, Length=356, Percent_Identity=26.685393258427, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI4501857, Length=352, Percent_Identity=27.5568181818182, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI4557231, Length=355, Percent_Identity=26.7605633802817, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI187960098, Length=355, Percent_Identity=26.7605633802817, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI7656849, Length=350, Percent_Identity=24.5714285714286, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI21361497, Length=375, Percent_Identity=24, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI76496475, Length=351, Percent_Identity=25.3561253561254, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI4557235, Length=351, Percent_Identity=25.3561253561254, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI4503943, Length=386, Percent_Identity=25.9067357512953, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI7669494, Length=366, Percent_Identity=25.4098360655738, Blast_Score=84, Evalue=3e-16,
Organism=Escherichia coli, GI87081958, Length=365, Percent_Identity=25.7534246575342, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1786223, Length=358, Percent_Identity=23.1843575418994, Blast_Score=85, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17534899, Length=357, Percent_Identity=26.890756302521, Blast_Score=122, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI17538396, Length=378, Percent_Identity=25.6613756613757, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17506239, Length=323, Percent_Identity=25.6965944272446, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17569725, Length=319, Percent_Identity=27.8996865203762, Blast_Score=111, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17508101, Length=355, Percent_Identity=26.1971830985915, Blast_Score=111, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI71985184, Length=392, Percent_Identity=25, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17570075, Length=355, Percent_Identity=25.6338028169014, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71990804, Length=255, Percent_Identity=25.4901960784314, Blast_Score=96, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17533517, Length=325, Percent_Identity=24, Blast_Score=96, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17505929, Length=359, Percent_Identity=25.0696378830084, Blast_Score=93, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI32563615, Length=234, Percent_Identity=26.4957264957265, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17551932, Length=358, Percent_Identity=24.5810055865922, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71985192, Length=339, Percent_Identity=24.7787610619469, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71982178, Length=275, Percent_Identity=26.1818181818182, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17534353, Length=385, Percent_Identity=23.6363636363636, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21355753, Length=371, Percent_Identity=28.0323450134771, Blast_Score=137, Evalue=2e-32,
Organism=Drosophila melanogaster, GI24646207, Length=367, Percent_Identity=28.0653950953678, Blast_Score=129, Evalue=3e-30,
Organism=Drosophila melanogaster, GI21356377, Length=315, Percent_Identity=28.5714285714286, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24666513, Length=369, Percent_Identity=25.2032520325203, Blast_Score=115, Evalue=6e-26,
Organism=Drosophila melanogaster, GI24660351, Length=354, Percent_Identity=27.683615819209, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI281363737, Length=388, Percent_Identity=23.9690721649485, Blast_Score=102, Evalue=6e-22,
Organism=Drosophila melanogaster, GI19920834, Length=352, Percent_Identity=26.9886363636364, Blast_Score=90, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 40399; Mature: 40399

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLTPSDEQRLLRESADRFIAETYTTKLREQNAKEPFGFSEAIWKQFADLGWLALPLPEQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEECCCHH
HGGIGGGAIEVSILMEAFGRGLVSEPYLSTVVLGAGLVAEHGRDEQKAALLPQIAEGMLR
CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHH
LAFAHTERAARADLSRVDTTARKDGDHYVLDGAKVAVLDGASADQLIVSARLANNGSGSL
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCHHEEEEECCCCCCCCE
RLFLVPCDAAGLSLADYPRLGGGRACNLTLQGVRVPADAMLGTDSDAYPAVEAVVDRALA
EEEEEECCCCCCCHHCCCCCCCCCEEEEEEECEECCHHHHCCCCCCCHHHHHHHHHHHHH
AMSAEAVGMMQTLTDKTLDYTKVRKQFGRPLAANQVVRHRLTDMSVQVDEARSMALRAAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEHHHHHHHHHHHHH
KADAEGTERGRAASGAKAKIGKGARFVAEQSVQLHGGMGVTEELDVGAYFKRLLAFETLF
HCCCCCCCCCCCCCCCCHHCCCCHHHHHHCCEEEECCCCCCHHCCHHHHHHHHHHHHHHH
GGSTHHYRRHAALSGRPV
CCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MDLTPSDEQRLLRESADRFIAETYTTKLREQNAKEPFGFSEAIWKQFADLGWLALPLPEQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEECCCHH
HGGIGGGAIEVSILMEAFGRGLVSEPYLSTVVLGAGLVAEHGRDEQKAALLPQIAEGMLR
CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHH
LAFAHTERAARADLSRVDTTARKDGDHYVLDGAKVAVLDGASADQLIVSARLANNGSGSL
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCHHEEEEECCCCCCCCE
RLFLVPCDAAGLSLADYPRLGGGRACNLTLQGVRVPADAMLGTDSDAYPAVEAVVDRALA
EEEEEECCCCCCCHHCCCCCCCCCEEEEEEECEECCHHHHCCCCCCCHHHHHHHHHHHHH
AMSAEAVGMMQTLTDKTLDYTKVRKQFGRPLAANQVVRHRLTDMSVQVDEARSMALRAAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEHHHHHHHHHHHHH
KADAEGTERGRAASGAKAKIGKGARFVAEQSVQLHGGMGVTEELDVGAYFKRLLAFETLF
HCCCCCCCCCCCCCCCCHHCCCCHHHHHHCCEEEECCCCCCHHCCHHHHHHHHHHHHHHH
GGSTHHYRRHAALSGRPV
CCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]