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The map label for this gene is clpS

Identifier: 192289806

GI number: 192289806

Start: 1469472

End: 1469783

Strand: Reverse

Name: clpS

Synonym: Rpal_1396

Alternate gene names: 192289806

Gene position: 1469783-1469472 (Counterclockwise)

Preceding gene: 192289808

Following gene: 192289799

Centisome position: 25.59

GC content: 63.46

Gene sequence:

>312_bases
ATGAGCAACATCGACCTGAAGCCGAAGACCAAGGCCAAGGCCAAAATCAAGGTCGAGCGGCCGAAGCTGCACAAGGTGAT
CCTGGTCAACGACGACTACACGCCGCGCGAGTTCGTGGTGTCGGTGCTGAAGGGCGAGTTCCGGATGACCGAGGATCAGG
CCACCAAGGTGATGCTCACCGCGCATCAGCGCGGCGTCTGCGTGGTCGGGGTGTTCACCAAGGACGTCGCCGAGACCAAA
GCCACCCGCGCAACCGACGCCGGCCGCGCCAAGGGCTATCCACTGCTGTTCACGACGGAGCCGGAGGAGTAG

Upstream 100 bases:

>100_bases
GATGTGCTTAGCTCAACCGCCCGGTTTTCCCGGGACCGTTGAGGCTGTAGGATTGGGCGACACGAGGATGCAACCAACAC
GCGACGCGGGTCGGCACCGG

Downstream 100 bases:

>100_bases
CGACGGCGGTGTAGTATCAAAACCGTTGCGCTTGCTATCCGAAAAGCATCATCGCCGGGCTCGACCCGGCGATCCATCTT
CTGCAGGACAACTCTTTGAT

Product: ATP-dependent Clp protease adaptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 102

Protein sequence:

>103_residues
MSNIDLKPKTKAKAKIKVERPKLHKVILVNDDYTPREFVVSVLKGEFRMTEDQATKVMLTAHQRGVCVVGVFTKDVAETK
ATRATDAGRAKGYPLLFTTEPEE

Sequences:

>Translated_103_residues
MSNIDLKPKTKAKAKIKVERPKLHKVILVNDDYTPREFVVSVLKGEFRMTEDQATKVMLTAHQRGVCVVGVFTKDVAETK
ATRATDAGRAKGYPLLFTTEPEE
>Mature_102_residues
SNIDLKPKTKAKAKIKVERPKLHKVILVNDDYTPREFVVSVLKGEFRMTEDQATKVMLTAHQRGVCVVGVFTKDVAETKA
TRATDAGRAKGYPLLFTTEPEE

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=97, Percent_Identity=42.2680412371134, Blast_Score=83, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS1_RHOPA (Q6NAI2)

Other databases:

- EMBL:   BX572596
- RefSeq:   NP_946554.2
- ProteinModelPortal:   Q6NAI2
- SMR:   Q6NAI2
- GeneID:   2691364
- GenomeReviews:   BX571963_GR
- KEGG:   rpa:RPA1203
- HOGENOM:   HBG644923
- ProtClustDB:   PRK13019
- BioCyc:   RPAL258594:RPA1203-MONOMER
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 11534; Mature: 11402

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNIDLKPKTKAKAKIKVERPKLHKVILVNDDYTPREFVVSVLKGEFRMTEDQATKVMLT
CCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHCCEEECCCCCEEEEEE
AHQRGVCVVGVFTKDVAETKATRATDAGRAKGYPLLFTTEPEE
ECCCCEEEEEEECCCHHHHHHCCCCCCCCCCCCEEEEEECCCC
>Mature Secondary Structure 
SNIDLKPKTKAKAKIKVERPKLHKVILVNDDYTPREFVVSVLKGEFRMTEDQATKVMLT
CCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHCCEEECCCCCEEEEEE
AHQRGVCVVGVFTKDVAETKATRATDAGRAKGYPLLFTTEPEE
ECCCCEEEEEEECCCHHHHHHCCCCCCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA