Definition Rhodopseudomonas palustris TIE-1 chromosome, complete genome.
Accession NC_011004
Length 5,744,041

Click here to switch to the map view.

The map label for this gene is 192289681

Identifier: 192289681

GI number: 192289681

Start: 1345348

End: 1346001

Strand: Reverse

Name: 192289681

Synonym: Rpal_1271

Alternate gene names: NA

Gene position: 1346001-1345348 (Counterclockwise)

Preceding gene: 192289688

Following gene: 192289677

Centisome position: 23.43

GC content: 66.97

Gene sequence:

>654_bases
ATGATGCGTTTGATCTATGGGGCAGCGCTGGTCTCGAGCTTGGTCGGCGCGGCTCATGCACAGTCTTCACAGCCCGCTCC
GACGTCGAAGCCGGGGGCCGTCAACGTTGATGGTACTAAATCACCATCGATCTCCGGGCCGGCAGCCGCCGATTCGCCGA
AATGTCCGGAGGCGTGCGTCCGCGCCAACAACGAGAAGGCCTCGGCGATCTGCGCCCGCAAGATCGAGGCGCAGGCTCCG
GGCGACTTCGAGTGGATCAGCAGGCCGTTCTCCGGCATTTTCCAGCAGGCCGATCCATCCAAGCCGGACAACGCCATCGT
CAATTATCGCGGCGACTCGATCCGCTTCCTGTCGCCGCAGAAGGAGTGGGTGCGGGTCTCGTATGAATGCGCCTTCGACG
CCGAGCGGGGGACCGTGGTCGGCGTCCGCGTCCGCCCCGGCCGGCTCGACCAGCCAATGGCGCTGCAGGCCCCACCGGGG
TCGAACGGGCAGCCGCAGCAGACCGGCCCGGTGAAGGCCGGACCGTTGGCCGAGGCCATCCTGAAGGCCGCCAAGCAGCG
TGGCGCCCAGCCGCAAAAGCCGCCGCCGCCCAAGGTCAGCGAACCGAGCCCGATTGACTTTACCCAGATCGATTCCCGCC
GCGGCAGTTGGTGA

Upstream 100 bases:

>100_bases
ATAATTGTTGAGACCACAAAGGGACGGCAAGATTGGACTCGCGCCTTCTGGAGTTTCGGACTAGAAAATAACTACGCGCC
CAACCATGGGTGGTATCAAA

Downstream 100 bases:

>100_bases
AGGCCGTATCGGCGCAGCGGCTCGCACAGCGGAGGCCGCATCGTGATGCTGTAAAACGAAGAAGGGATCGGGAAAAGCGA
GGGGAAATCGCTGGAAATCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MMRLIYGAALVSSLVGAAHAQSSQPAPTSKPGAVNVDGTKSPSISGPAAADSPKCPEACVRANNEKASAICARKIEAQAP
GDFEWISRPFSGIFQQADPSKPDNAIVNYRGDSIRFLSPQKEWVRVSYECAFDAERGTVVGVRVRPGRLDQPMALQAPPG
SNGQPQQTGPVKAGPLAEAILKAAKQRGAQPQKPPPPKVSEPSPIDFTQIDSRRGSW

Sequences:

>Translated_217_residues
MMRLIYGAALVSSLVGAAHAQSSQPAPTSKPGAVNVDGTKSPSISGPAAADSPKCPEACVRANNEKASAICARKIEAQAP
GDFEWISRPFSGIFQQADPSKPDNAIVNYRGDSIRFLSPQKEWVRVSYECAFDAERGTVVGVRVRPGRLDQPMALQAPPG
SNGQPQQTGPVKAGPLAEAILKAAKQRGAQPQKPPPPKVSEPSPIDFTQIDSRRGSW
>Mature_217_residues
MMRLIYGAALVSSLVGAAHAQSSQPAPTSKPGAVNVDGTKSPSISGPAAADSPKCPEACVRANNEKASAICARKIEAQAP
GDFEWISRPFSGIFQQADPSKPDNAIVNYRGDSIRFLSPQKEWVRVSYECAFDAERGTVVGVRVRPGRLDQPMALQAPPG
SNGQPQQTGPVKAGPLAEAILKAAKQRGAQPQKPPPPKVSEPSPIDFTQIDSRRGSW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22965; Mature: 22965

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRLIYGAALVSSLVGAAHAQSSQPAPTSKPGAVNVDGTKSPSISGPAAADSPKCPEACV
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHH
RANNEKASAICARKIEAQAPGDFEWISRPFSGIFQQADPSKPDNAIVNYRGDSIRFLSPQ
HCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEECCC
KEWVRVSYECAFDAERGTVVGVRVRPGRLDQPMALQAPPGSNGQPQQTGPVKAGPLAEAI
CCEEEEEEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHH
LKAAKQRGAQPQKPPPPKVSEPSPIDFTQIDSRRGSW
HHHHHHHCCCCCCCCCCCCCCCCCCCHHEECCCCCCC
>Mature Secondary Structure
MMRLIYGAALVSSLVGAAHAQSSQPAPTSKPGAVNVDGTKSPSISGPAAADSPKCPEACV
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHH
RANNEKASAICARKIEAQAPGDFEWISRPFSGIFQQADPSKPDNAIVNYRGDSIRFLSPQ
HCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEECCC
KEWVRVSYECAFDAERGTVVGVRVRPGRLDQPMALQAPPGSNGQPQQTGPVKAGPLAEAI
CCEEEEEEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHH
LKAAKQRGAQPQKPPPPKVSEPSPIDFTQIDSRRGSW
HHHHHHHCCCCCCCCCCCCCCCCCCCHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA