| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192289681
Identifier: 192289681
GI number: 192289681
Start: 1345348
End: 1346001
Strand: Reverse
Name: 192289681
Synonym: Rpal_1271
Alternate gene names: NA
Gene position: 1346001-1345348 (Counterclockwise)
Preceding gene: 192289688
Following gene: 192289677
Centisome position: 23.43
GC content: 66.97
Gene sequence:
>654_bases ATGATGCGTTTGATCTATGGGGCAGCGCTGGTCTCGAGCTTGGTCGGCGCGGCTCATGCACAGTCTTCACAGCCCGCTCC GACGTCGAAGCCGGGGGCCGTCAACGTTGATGGTACTAAATCACCATCGATCTCCGGGCCGGCAGCCGCCGATTCGCCGA AATGTCCGGAGGCGTGCGTCCGCGCCAACAACGAGAAGGCCTCGGCGATCTGCGCCCGCAAGATCGAGGCGCAGGCTCCG GGCGACTTCGAGTGGATCAGCAGGCCGTTCTCCGGCATTTTCCAGCAGGCCGATCCATCCAAGCCGGACAACGCCATCGT CAATTATCGCGGCGACTCGATCCGCTTCCTGTCGCCGCAGAAGGAGTGGGTGCGGGTCTCGTATGAATGCGCCTTCGACG CCGAGCGGGGGACCGTGGTCGGCGTCCGCGTCCGCCCCGGCCGGCTCGACCAGCCAATGGCGCTGCAGGCCCCACCGGGG TCGAACGGGCAGCCGCAGCAGACCGGCCCGGTGAAGGCCGGACCGTTGGCCGAGGCCATCCTGAAGGCCGCCAAGCAGCG TGGCGCCCAGCCGCAAAAGCCGCCGCCGCCCAAGGTCAGCGAACCGAGCCCGATTGACTTTACCCAGATCGATTCCCGCC GCGGCAGTTGGTGA
Upstream 100 bases:
>100_bases ATAATTGTTGAGACCACAAAGGGACGGCAAGATTGGACTCGCGCCTTCTGGAGTTTCGGACTAGAAAATAACTACGCGCC CAACCATGGGTGGTATCAAA
Downstream 100 bases:
>100_bases AGGCCGTATCGGCGCAGCGGCTCGCACAGCGGAGGCCGCATCGTGATGCTGTAAAACGAAGAAGGGATCGGGAAAAGCGA GGGGAAATCGCTGGAAATCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 217; Mature: 217
Protein sequence:
>217_residues MMRLIYGAALVSSLVGAAHAQSSQPAPTSKPGAVNVDGTKSPSISGPAAADSPKCPEACVRANNEKASAICARKIEAQAP GDFEWISRPFSGIFQQADPSKPDNAIVNYRGDSIRFLSPQKEWVRVSYECAFDAERGTVVGVRVRPGRLDQPMALQAPPG SNGQPQQTGPVKAGPLAEAILKAAKQRGAQPQKPPPPKVSEPSPIDFTQIDSRRGSW
Sequences:
>Translated_217_residues MMRLIYGAALVSSLVGAAHAQSSQPAPTSKPGAVNVDGTKSPSISGPAAADSPKCPEACVRANNEKASAICARKIEAQAP GDFEWISRPFSGIFQQADPSKPDNAIVNYRGDSIRFLSPQKEWVRVSYECAFDAERGTVVGVRVRPGRLDQPMALQAPPG SNGQPQQTGPVKAGPLAEAILKAAKQRGAQPQKPPPPKVSEPSPIDFTQIDSRRGSW >Mature_217_residues MMRLIYGAALVSSLVGAAHAQSSQPAPTSKPGAVNVDGTKSPSISGPAAADSPKCPEACVRANNEKASAICARKIEAQAP GDFEWISRPFSGIFQQADPSKPDNAIVNYRGDSIRFLSPQKEWVRVSYECAFDAERGTVVGVRVRPGRLDQPMALQAPPG SNGQPQQTGPVKAGPLAEAILKAAKQRGAQPQKPPPPKVSEPSPIDFTQIDSRRGSW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22965; Mature: 22965
Theoretical pI: Translated: 9.83; Mature: 9.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRLIYGAALVSSLVGAAHAQSSQPAPTSKPGAVNVDGTKSPSISGPAAADSPKCPEACV CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHH RANNEKASAICARKIEAQAPGDFEWISRPFSGIFQQADPSKPDNAIVNYRGDSIRFLSPQ HCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEECCC KEWVRVSYECAFDAERGTVVGVRVRPGRLDQPMALQAPPGSNGQPQQTGPVKAGPLAEAI CCEEEEEEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHH LKAAKQRGAQPQKPPPPKVSEPSPIDFTQIDSRRGSW HHHHHHHCCCCCCCCCCCCCCCCCCCHHEECCCCCCC >Mature Secondary Structure MMRLIYGAALVSSLVGAAHAQSSQPAPTSKPGAVNVDGTKSPSISGPAAADSPKCPEACV CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHH RANNEKASAICARKIEAQAPGDFEWISRPFSGIFQQADPSKPDNAIVNYRGDSIRFLSPQ HCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEECCC KEWVRVSYECAFDAERGTVVGVRVRPGRLDQPMALQAPPGSNGQPQQTGPVKAGPLAEAI CCEEEEEEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHH LKAAKQRGAQPQKPPPPKVSEPSPIDFTQIDSRRGSW HHHHHHHCCCCCCCCCCCCCCCCCCCHHEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA