Click here to switch to the map view.

The map label for this gene is ybfF [C]

Identifier: 192289598

GI number: 192289598

Start: 1260735

End: 1261604

Strand: Reverse

Name: ybfF [C]

Synonym: Rpal_1188

Alternate gene names: 192289598

Gene position: 1261604-1260735 (Counterclockwise)

Preceding gene: 192289600

Following gene: 192289597

Centisome position: 21.96

GC content: 66.21

Gene sequence:

>870_bases
ATGCAACAACCACAAAGCCGCTTCTTTCAATCCCACGGCCTGCGCCTGCACTGTTGGGACTGGGGCAACGCCGCCGCGCC
GCCGCTGCTGTTGATCCATGGCGGCAAGGACCACGGCCGAAGCTGGGATGTTTTCGCCCGCGCACTGCAGCCGCACTTTC
ATGTGATCGCGCCGGATCTGCGGGGCCATGGCGATTCGGACTGGGCGCGCGGCGGCAGCTACGCGCTGCCGGAGTACGTC
TACGACCTGACCCGCCTGCCGCCGCTCGCTGATGCTCAGCCTGCCACCGTGATCGGCCATTCGATGGGCGGGATGATCGC
GATGCTGTATGCCGGGACATTCCCGGAAAAGGTGAAACGGCTCGTGGTGCTCGACGGCGTGACGGTCCGCCCCGACGCCA
AGATGGCCCCGGTCCACGAGCGGATGATCAAATGGCTCGGGCAGCTCGACCGGCTGGAAGGCCGCGAGCCACGCCACTAC
CCGACGATCGCCAATGCCGCAGCGCAGATGCGCGCCCACAACAAACGGCTGACGCCGGACCTTGCGCTGCACCTCGCCAC
CCATGGGGCCCGCCGCAACGACGACGGCAGCTATTCGTGGAAGTTCGATCCGTATCAGCGTGTCACGGCACCGCACCGGC
TGGCGCCGCAGGAATACGCCGAGCTGTGGGGGCGGATCACCTGCCCGACGCTGCTGTTGTTTGCAGGCGAGAGCTTCATC
GATCCGGCTCGGGCCGCAGAAGCCTCACGATATTTCGCGGACGTTCGCGCCGAGATCGTCGCCGATGCCGGCCACTGGCT
GCAACACGACCGGCCGGAAGAGGTGCTGCGGCTGATTTCGGGATTCGTCGAGCTACCATCCAGGTCTTGA

Upstream 100 bases:

>100_bases
CCGATGGGGCTCTCCCGGTGAGGCGTCGCCCGCCAGCAGGGCATTGAAGCGGTTGCCGGCCCGGGCTATTGCAGCCGTGG
AAACGCTCGAAAAAACAACA

Downstream 100 bases:

>100_bases
AGTACGCCCCCTCCTCGTCATTGCGAGGAGGCGAAGCCGACGAAGCAATCCAGCCCAGGGCACGGGGCCCTCGATTGCTT
CGCTTCGCTCGCAGTGACGA

Product: alpha/beta hydrolase fold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MQQPQSRFFQSHGLRLHCWDWGNAAAPPLLLIHGGKDHGRSWDVFARALQPHFHVIAPDLRGHGDSDWARGGSYALPEYV
YDLTRLPPLADAQPATVIGHSMGGMIAMLYAGTFPEKVKRLVVLDGVTVRPDAKMAPVHERMIKWLGQLDRLEGREPRHY
PTIANAAAQMRAHNKRLTPDLALHLATHGARRNDDGSYSWKFDPYQRVTAPHRLAPQEYAELWGRITCPTLLLFAGESFI
DPARAAEASRYFADVRAEIVADAGHWLQHDRPEEVLRLISGFVELPSRS

Sequences:

>Translated_289_residues
MQQPQSRFFQSHGLRLHCWDWGNAAAPPLLLIHGGKDHGRSWDVFARALQPHFHVIAPDLRGHGDSDWARGGSYALPEYV
YDLTRLPPLADAQPATVIGHSMGGMIAMLYAGTFPEKVKRLVVLDGVTVRPDAKMAPVHERMIKWLGQLDRLEGREPRHY
PTIANAAAQMRAHNKRLTPDLALHLATHGARRNDDGSYSWKFDPYQRVTAPHRLAPQEYAELWGRITCPTLLLFAGESFI
DPARAAEASRYFADVRAEIVADAGHWLQHDRPEEVLRLISGFVELPSRS
>Mature_289_residues
MQQPQSRFFQSHGLRLHCWDWGNAAAPPLLLIHGGKDHGRSWDVFARALQPHFHVIAPDLRGHGDSDWARGGSYALPEYV
YDLTRLPPLADAQPATVIGHSMGGMIAMLYAGTFPEKVKRLVVLDGVTVRPDAKMAPVHERMIKWLGQLDRLEGREPRHY
PTIANAAAQMRAHNKRLTPDLALHLATHGARRNDDGSYSWKFDPYQRVTAPHRLAPQEYAELWGRITCPTLLLFAGESFI
DPARAAEASRYFADVRAEIVADAGHWLQHDRPEEVLRLISGFVELPSRS

Specific function: Unknown

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dmpD/todF/xylF esterase family [H]

Homologues:

Organism=Homo sapiens, GI218777837, Length=301, Percent_Identity=25.2491694352159, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI218777840, Length=287, Percent_Identity=25.0871080139373, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI13376164, Length=287, Percent_Identity=25.0871080139373, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI18777795, Length=290, Percent_Identity=22.0689655172414, Blast_Score=74, Evalue=1e-13,
Organism=Escherichia coli, GI1786902, Length=263, Percent_Identity=25.8555133079848, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17551890, Length=272, Percent_Identity=23.5294117647059, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24667999, Length=285, Percent_Identity=24.9122807017544, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR000639 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 32492; Mature: 32492

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQPQSRFFQSHGLRLHCWDWGNAAAPPLLLIHGGKDHGRSWDVFARALQPHFHVIAPDL
CCCHHHHHHHHCCCEEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCEEEECCCC
RGHGDSDWARGGSYALPEYVYDLTRLPPLADAQPATVIGHSMGGMIAMLYAGTFPEKVKR
CCCCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
LVVLDGVTVRPDAKMAPVHERMIKWLGQLDRLEGREPRHYPTIANAAAQMRAHNKRLTPD
EHEECCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHH
LALHLATHGARRNDDGSYSWKFDPYQRVTAPHRLAPQEYAELWGRITCPTLLLFAGESFI
HHHHHHHCCCCCCCCCCEEEECCCHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHCCCHHC
DPARAAEASRYFADVRAEIVADAGHWLQHDRPEEVLRLISGFVELPSRS
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQQPQSRFFQSHGLRLHCWDWGNAAAPPLLLIHGGKDHGRSWDVFARALQPHFHVIAPDL
CCCHHHHHHHHCCCEEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCEEEECCCC
RGHGDSDWARGGSYALPEYVYDLTRLPPLADAQPATVIGHSMGGMIAMLYAGTFPEKVKR
CCCCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
LVVLDGVTVRPDAKMAPVHERMIKWLGQLDRLEGREPRHYPTIANAAAQMRAHNKRLTPD
EHEECCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHH
LALHLATHGARRNDDGSYSWKFDPYQRVTAPHRLAPQEYAELWGRITCPTLLLFAGESFI
HHHHHHHCCCCCCCCCCEEEECCCHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHCCCHHC
DPARAAEASRYFADVRAEIVADAGHWLQHDRPEEVLRLISGFVELPSRS
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]