| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is bphB [H]
Identifier: 192289592
GI number: 192289592
Start: 1253332
End: 1255872
Strand: Reverse
Name: bphB [H]
Synonym: Rpal_1182
Alternate gene names: 192289592
Gene position: 1255872-1253332 (Counterclockwise)
Preceding gene: 192289594
Following gene: 192289584
Centisome position: 21.86
GC content: 65.68
Gene sequence:
>2541_bases ATGCCGCGTAAGGTCGATCTCACCTCCTGCGATCGCGAGCCGATCCACATCCCCGGCAGCATTCAGCCGTGCGGCTGCCT GCTGGCCTGCGACGCGCAGGCGGTGCGGATCACGCGCATTTCGGAAAATGCCGGCGCGTTCTTTGGACGCGAAACTCCGC GGGTCGGTGAGCTACTCGCCGATTATTTCGGCGAGACCGAAGCCCATGCGCTGCGAAACGCACTGGCGCAGTCCTCCGAT CCAAAGCGGCCGGCGCTGATCTTCGGTTGGCGCGACGGCGTGACCGGCCGCACCTTCGACATCTCGCTGCATCGCCATGA CGGCACATCGATCGTCGAATTCGAACCTGCGGCGGCCGATCAGGCCGACAATCCGCTGCGGCTGACGCGGCAGATCATCG CGCGCACCAAAGAGCTGAAGTCGCTCGAGGAGATGGCCGCACGGGTGCCGCGCTATCTCCAGGCGATGCTCGGCTATCAC CGCGTGATGATGTACCGCTTCGCGGACGATGGCTCCGGCAAAGTGATCGGCGAGGCGAAGCGCAGCGACCTCGAGAGCTT TCTCGGCCAGCACTTTCCGGCGTCGGACATCCCGCAGCAGGCGCGGCTGCTGTACTTGAAGAACGCGATCCGCGTGATCT CGGATTCGCGCGGCGACAGCAGCCGGATCGTGCCGGAGCGCGACGCCTCCGGCGCCGCGCTCGATCTGTCGTTCGCGCAC CTGCGCAGCGTCTCGCCCATCCATCTCGAATATCTGCGGAACATGGGCGTCAGCGCCTCGATGTCGCTGTCGATCATCAT TGACGGCACGCTGTGGGGATTGATCGCCTGTCATCATTACGAGCCGCGTGCCGTGCCGATGGCGCAGCGCGTCGCCGCCG AAATGTTCGCCGATTTCTTCTCGCTGCACTTCACCGCCGCCCACCACCAACGCCGCTTCCAGTCCTCGCTGCGCACCCGG CGGACACTCGACAGCCTGACCAGCGAGATGTCGTTCGACGCCTCGGTCGACGACTTCCTGCGCGGCAACCTGAAACGCAT CGCCGACCTGATCCCGAGCGACGGCGTCGGGCTGTGGATGAACGGGGTCTGGACCGCGCACGGATCGACGCCGCCCGCTG ACGCGCTGCCGTCGATCCTGCATCTTCTCACCGGCCGGGCCGGCAACGAGATCGTCGCCACCCACGCCCTCACCGACCGG ATCGCGGCGGCGACCGACTATGCGGGCGCCGCAGCCGGCATGCTGGCGATCCCGCTGTCGCAGGTCGCCGGCGATTACTT GCTGTTCTTCCGCAAGGAGCAAGTCCAGACGCTGAATTGGGCGGGCGATCCGAACAAGACCTACGACACCGGCCCGCTCG GCGACCGGCTGACGCCACGCAAGAGCTTCTCGATCTGGAAAGAGCAAGTCGATGGCCAATCGGTACCGTGGAGCCCCGAC GATCGCGACACCGCGGCAACCATTCAGGTTGGCTTGCGCGAAGTCCTGCTGCGGCAGAGCGAAATACTCTCGGCTGAGCG CAAGAAGGCGGAGGTGCGACAGCGCGTCCTCAACGAAGAACTCAATCATCGCGTCAAGAACATCCTGGCGCTGATCAAAT CGCTGGTGAATCAGCCCGCCGGCGAAGGCAAATCGCTGGAGGAGTTCGCTTCGGCGCTCCGCGGTCGGATCATGGCGCTG TCGTTTGCGCATGATCAGGTGGTGCGGTCCGACGGCGGCGGCGCGCTGCTCGATCTGATCCAAGCCGAACTGTCGCCCTA CCCGGCGAGCCAGATCGCTCTCGAGGGCCCGGATGTCGGCGTCGATGCCCGCGCCTATTCGGTGCTGGCGCTGGTGCTAC ACGAGCTGGCCACCAATGCGGCGAAATACGGCGCGTTGTCGCGTTCGTCGGGACGCCTCAAGGTCGCCTGGACGGTGGGT GACGACGGCCGCTGCGACATCGAGTGGACCGAGAGCTGCGGCCCGCCGGTCCGGCCACCGACTCGGCAGGGCTTCGGCAC GGTGCTGCTCAGCCGCAGCATTCCGTTCGATCTCGGCGGATGGAGCGAAGTCGACTACCTGCCGGGCGGCGTCGTCGCCC GGCTCGGTATTCCGGGCCAATTCGTCACCGAGACGCTGCAGCGGCTGTCCAGCGTGCAGGCAAGCGGCCAGAGCACCGAC AGCAGCGCGCTGCTGAACATCGCCGACGCATCGATCCTGCTCGTCGAAGATCAACTGGTGATCGCACTGGACGCCGAGGA TATGCTCGGCGCAATCGGAGCGAAGTTGGTAACCTCGGTCGCCTCCGCCGAAGAAGCGCTGCAGACAATCGCGCAGCAGC CCCCGACGCTGGCAATTCTCGACGTCAATCTCGGCAACGGCAGTTCGCTTCCGGTGGCCGATGAACTCGAACGCCTCGGC ATCCCTTTCATCTTCGCCACCGGCTACGGCGACACGGCGATGATCCCCGAGCGCATGCGCGGCCTGCCGATCGTCCGTAA GCCGTATTCGATCGACTCGCTGCGCGGTGCCCTGTCCGCAATGCTCGACGATCGCGAATGA
Upstream 100 bases:
>100_bases GCTGTTGGCGCTTCCATCCTGTTGACGATCACCTGTGAGCACTGCGCGCCTCCGATCGAGCGCAGAGCGGAGCGCGCTCG GTACCCGCTGGGGGCGTCCG
Downstream 100 bases:
>100_bases GCGACGCGCAGGCTCAGCCGATACCGACGCCGAGCAGCCGGTCGGCCAGTTCGCGGTCGGCCCTGAACTCCGCGGCCTGG CCCCGCCAGACGATCCGGCC
Product: response regulator receiver modulated GAF sensor protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 846; Mature: 845
Protein sequence:
>846_residues MPRKVDLTSCDREPIHIPGSIQPCGCLLACDAQAVRITRISENAGAFFGRETPRVGELLADYFGETEAHALRNALAQSSD PKRPALIFGWRDGVTGRTFDISLHRHDGTSIVEFEPAAADQADNPLRLTRQIIARTKELKSLEEMAARVPRYLQAMLGYH RVMMYRFADDGSGKVIGEAKRSDLESFLGQHFPASDIPQQARLLYLKNAIRVISDSRGDSSRIVPERDASGAALDLSFAH LRSVSPIHLEYLRNMGVSASMSLSIIIDGTLWGLIACHHYEPRAVPMAQRVAAEMFADFFSLHFTAAHHQRRFQSSLRTR RTLDSLTSEMSFDASVDDFLRGNLKRIADLIPSDGVGLWMNGVWTAHGSTPPADALPSILHLLTGRAGNEIVATHALTDR IAAATDYAGAAAGMLAIPLSQVAGDYLLFFRKEQVQTLNWAGDPNKTYDTGPLGDRLTPRKSFSIWKEQVDGQSVPWSPD DRDTAATIQVGLREVLLRQSEILSAERKKAEVRQRVLNEELNHRVKNILALIKSLVNQPAGEGKSLEEFASALRGRIMAL SFAHDQVVRSDGGGALLDLIQAELSPYPASQIALEGPDVGVDARAYSVLALVLHELATNAAKYGALSRSSGRLKVAWTVG DDGRCDIEWTESCGPPVRPPTRQGFGTVLLSRSIPFDLGGWSEVDYLPGGVVARLGIPGQFVTETLQRLSSVQASGQSTD SSALLNIADASILLVEDQLVIALDAEDMLGAIGAKLVTSVASAEEALQTIAQQPPTLAILDVNLGNGSSLPVADELERLG IPFIFATGYGDTAMIPERMRGLPIVRKPYSIDSLRGALSAMLDDRE
Sequences:
>Translated_846_residues MPRKVDLTSCDREPIHIPGSIQPCGCLLACDAQAVRITRISENAGAFFGRETPRVGELLADYFGETEAHALRNALAQSSD PKRPALIFGWRDGVTGRTFDISLHRHDGTSIVEFEPAAADQADNPLRLTRQIIARTKELKSLEEMAARVPRYLQAMLGYH RVMMYRFADDGSGKVIGEAKRSDLESFLGQHFPASDIPQQARLLYLKNAIRVISDSRGDSSRIVPERDASGAALDLSFAH LRSVSPIHLEYLRNMGVSASMSLSIIIDGTLWGLIACHHYEPRAVPMAQRVAAEMFADFFSLHFTAAHHQRRFQSSLRTR RTLDSLTSEMSFDASVDDFLRGNLKRIADLIPSDGVGLWMNGVWTAHGSTPPADALPSILHLLTGRAGNEIVATHALTDR IAAATDYAGAAAGMLAIPLSQVAGDYLLFFRKEQVQTLNWAGDPNKTYDTGPLGDRLTPRKSFSIWKEQVDGQSVPWSPD DRDTAATIQVGLREVLLRQSEILSAERKKAEVRQRVLNEELNHRVKNILALIKSLVNQPAGEGKSLEEFASALRGRIMAL SFAHDQVVRSDGGGALLDLIQAELSPYPASQIALEGPDVGVDARAYSVLALVLHELATNAAKYGALSRSSGRLKVAWTVG DDGRCDIEWTESCGPPVRPPTRQGFGTVLLSRSIPFDLGGWSEVDYLPGGVVARLGIPGQFVTETLQRLSSVQASGQSTD SSALLNIADASILLVEDQLVIALDAEDMLGAIGAKLVTSVASAEEALQTIAQQPPTLAILDVNLGNGSSLPVADELERLG IPFIFATGYGDTAMIPERMRGLPIVRKPYSIDSLRGALSAMLDDRE >Mature_845_residues PRKVDLTSCDREPIHIPGSIQPCGCLLACDAQAVRITRISENAGAFFGRETPRVGELLADYFGETEAHALRNALAQSSDP KRPALIFGWRDGVTGRTFDISLHRHDGTSIVEFEPAAADQADNPLRLTRQIIARTKELKSLEEMAARVPRYLQAMLGYHR VMMYRFADDGSGKVIGEAKRSDLESFLGQHFPASDIPQQARLLYLKNAIRVISDSRGDSSRIVPERDASGAALDLSFAHL RSVSPIHLEYLRNMGVSASMSLSIIIDGTLWGLIACHHYEPRAVPMAQRVAAEMFADFFSLHFTAAHHQRRFQSSLRTRR TLDSLTSEMSFDASVDDFLRGNLKRIADLIPSDGVGLWMNGVWTAHGSTPPADALPSILHLLTGRAGNEIVATHALTDRI AAATDYAGAAAGMLAIPLSQVAGDYLLFFRKEQVQTLNWAGDPNKTYDTGPLGDRLTPRKSFSIWKEQVDGQSVPWSPDD RDTAATIQVGLREVLLRQSEILSAERKKAEVRQRVLNEELNHRVKNILALIKSLVNQPAGEGKSLEEFASALRGRIMALS FAHDQVVRSDGGGALLDLIQAELSPYPASQIALEGPDVGVDARAYSVLALVLHELATNAAKYGALSRSSGRLKVAWTVGD DGRCDIEWTESCGPPVRPPTRQGFGTVLLSRSIPFDLGGWSEVDYLPGGVVARLGIPGQFVTETLQRLSSVQASGQSTDS SALLNIADASILLVEDQLVIALDAEDMLGAIGAKLVTSVASAEEALQTIAQQPPTLAILDVNLGNGSSLPVADELERLGI PFIFATGYGDTAMIPERMRGLPIVRKPYSIDSLRGALSAMLDDRE
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: COG4251
COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR013654 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 91900; Mature: 91769
Theoretical pI: Translated: 5.84; Mature: 5.84
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50046 PHYTOCHROME_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRKVDLTSCDREPIHIPGSIQPCGCLLACDAQAVRITRISENAGAFFGRETPRVGELLA CCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHH DYFGETEAHALRNALAQSSDPKRPALIFGWRDGVTGRTFDISLHRHDGTSIVEFEPAAAD HHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCC QADNPLRLTRQIIARTKELKSLEEMAARVPRYLQAMLGYHRVMMYRFADDGSGKVIGEAK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEECHHH RSDLESFLGQHFPASDIPQQARLLYLKNAIRVISDSRGDSSRIVPERDASGAALDLSFAH HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHH LRSVSPIHLEYLRNMGVSASMSLSIIIDGTLWGLIACHHYEPRAVPMAQRVAAEMFADFF HHCCCHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH SLHFTAAHHQRRFQSSLRTRRTLDSLTSEMSFDASVDDFLRGNLKRIADLIPSDGVGLWM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHCCCCCCEEEE NGVWTAHGSTPPADALPSILHLLTGRAGNEIVATHALTDRIAAATDYAGAAAGMLAIPLS CCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHH QVAGDYLLFFRKEQVQTLNWAGDPNKTYDTGPLGDRLTPRKSFSIWKEQVDGQSVPWSPD HHCCHHHEEEEHHHHHEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC DRDTAATIQVGLREVLLRQSEILSAERKKAEVRQRVLNEELNHRVKNILALIKSLVNQPA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GEGKSLEEFASALRGRIMALSFAHDQVVRSDGGGALLDLIQAELSPYPASQIALEGPDVG CCCCCHHHHHHHHHCCEEEEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCHHEEECCCCCC VDARAYSVLALVLHELATNAAKYGALSRSSGRLKVAWTVGDDGRCDIEWTESCGPPVRPP CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCC TRQGFGTVLLSRSIPFDLGGWSEVDYLPGGVVARLGIPGQFVTETLQRLSSVQASGQSTD CCCCCHHEEEECCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCC SSALLNIADASILLVEDQLVIALDAEDMLGAIGAKLVTSVASAEEALQTIAQQPPTLAIL CHHEEEECCCEEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE DVNLGNGSSLPVADELERLGIPFIFATGYGDTAMIPERMRGLPIVRKPYSIDSLRGALSA EEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCCCEECCCCHHHHHHHHHH MLDDRE HHCCCC >Mature Secondary Structure PRKVDLTSCDREPIHIPGSIQPCGCLLACDAQAVRITRISENAGAFFGRETPRVGELLA CCCCCCCCCCCCCEECCCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHH DYFGETEAHALRNALAQSSDPKRPALIFGWRDGVTGRTFDISLHRHDGTSIVEFEPAAAD HHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCC QADNPLRLTRQIIARTKELKSLEEMAARVPRYLQAMLGYHRVMMYRFADDGSGKVIGEAK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEECHHH RSDLESFLGQHFPASDIPQQARLLYLKNAIRVISDSRGDSSRIVPERDASGAALDLSFAH HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHH LRSVSPIHLEYLRNMGVSASMSLSIIIDGTLWGLIACHHYEPRAVPMAQRVAAEMFADFF HHCCCHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH SLHFTAAHHQRRFQSSLRTRRTLDSLTSEMSFDASVDDFLRGNLKRIADLIPSDGVGLWM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHCCCCCCEEEE NGVWTAHGSTPPADALPSILHLLTGRAGNEIVATHALTDRIAAATDYAGAAAGMLAIPLS CCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHH QVAGDYLLFFRKEQVQTLNWAGDPNKTYDTGPLGDRLTPRKSFSIWKEQVDGQSVPWSPD HHCCHHHEEEEHHHHHEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC DRDTAATIQVGLREVLLRQSEILSAERKKAEVRQRVLNEELNHRVKNILALIKSLVNQPA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GEGKSLEEFASALRGRIMALSFAHDQVVRSDGGGALLDLIQAELSPYPASQIALEGPDVG CCCCCHHHHHHHHHCCEEEEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCHHEEECCCCCC VDARAYSVLALVLHELATNAAKYGALSRSSGRLKVAWTVGDDGRCDIEWTESCGPPVRPP CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCC TRQGFGTVLLSRSIPFDLGGWSEVDYLPGGVVARLGIPGQFVTETLQRLSSVQASGQSTD CCCCCHHEEEECCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCC SSALLNIADASILLVEDQLVIALDAEDMLGAIGAKLVTSVASAEEALQTIAQQPPTLAIL CHHEEEECCCEEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE DVNLGNGSSLPVADELERLGIPFIFATGYGDTAMIPERMRGLPIVRKPYSIDSLRGALSA EEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCCCEECCCCHHHHHHHHHH MLDDRE HHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]