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The map label for this gene is yqxC [H]

Identifier: 192289447

GI number: 192289447

Start: 1083410

End: 1084150

Strand: Reverse

Name: yqxC [H]

Synonym: Rpal_1020

Alternate gene names: 192289447

Gene position: 1084150-1083410 (Counterclockwise)

Preceding gene: 192289448

Following gene: 192289446

Centisome position: 18.87

GC content: 68.15

Gene sequence:

>741_bases
ATGGCCAAGTCATCGGACTCCACGCCCCGCAAGCGCGCCGATGTCGTGCTGGTCGAACGCGGCCTGTTCGACAGCCGTGC
ACGGGCGCAGGCGGCGATCGAGGCCGGCCTCGTAGTCGCGGATGGCAAACCGGTGACGAAAGTCTCTGAGCCGATCGCGC
TTGATGCCGTGCTCGAAGCGCAGCCGGCGCATCCGTGGGTGTCGCGGGGCGGCGTCAAGCTCGCCGGCGCGCTGGAGCGC
TACCTGATCGAGATCGAGGATCACGTCTGCCTCGACGTCGGCTCCTCCACCGGCGGCTTCACCGAGGTGCTGCTGGCGCA
CGGCGCCGCGCTGGTGTTCGCGGTTGATGTCGGCCGCGATCAACTCCACGCTTCGCTGCGCGGCCATCCCAAGATCGTCT
CGATGGAAGAGACCGACATCCGAAAGCTCGAGGGCACGCGGCTGCCGCAGCGGCCGGACGTCGTGGTGATCGATGCCAGC
TTCATCTCACTGAAACAGGTGCTGCCCGCGGCGCTGTCGCTCGCCGCATCGCCGATGAGTCTGCTGGCGCTGATCAAGCC
GCAGTTCGAGGCGCCCTCGAAGCGCGGCATCGTCCGCGACGCCAAGGTGCACCGCGCGGTGTGCGACGACGCCGTCGCCT
TCGCCGCCTCGCTCGGTTGCCGTGACATCGAGGTATTTGCCTCGTCGATCGCCGGCGGCGACGGCAATGTCGAGTTCTTC
CTCGGTGCGAAGCGCGGCTGA

Upstream 100 bases:

>100_bases
CACGCCGGCGGCCAGCCGACCTGTGGCACGATCTCGACAGCTTCACCGCCTGTCTTCAGATGGCGGCAGAGCGGCTGCGG
CCGCAACAGGCGCACTGACC

Downstream 100 bases:

>100_bases
AGGCGTCCTGGGCGCGACGACTTGGCCGGAACCAAAGTCTTACTCCGGCCGCAACTTCGGCTATGGTGCGCGCCATGACC
GCACCTGGTTCCAACATCGC

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MAKSSDSTPRKRADVVLVERGLFDSRARAQAAIEAGLVVADGKPVTKVSEPIALDAVLEAQPAHPWVSRGGVKLAGALER
YLIEIEDHVCLDVGSSTGGFTEVLLAHGAALVFAVDVGRDQLHASLRGHPKIVSMEETDIRKLEGTRLPQRPDVVVIDAS
FISLKQVLPAALSLAASPMSLLALIKPQFEAPSKRGIVRDAKVHRAVCDDAVAFAASLGCRDIEVFASSIAGGDGNVEFF
LGAKRG

Sequences:

>Translated_246_residues
MAKSSDSTPRKRADVVLVERGLFDSRARAQAAIEAGLVVADGKPVTKVSEPIALDAVLEAQPAHPWVSRGGVKLAGALER
YLIEIEDHVCLDVGSSTGGFTEVLLAHGAALVFAVDVGRDQLHASLRGHPKIVSMEETDIRKLEGTRLPQRPDVVVIDAS
FISLKQVLPAALSLAASPMSLLALIKPQFEAPSKRGIVRDAKVHRAVCDDAVAFAASLGCRDIEVFASSIAGGDGNVEFF
LGAKRG
>Mature_245_residues
AKSSDSTPRKRADVVLVERGLFDSRARAQAAIEAGLVVADGKPVTKVSEPIALDAVLEAQPAHPWVSRGGVKLAGALERY
LIEIEDHVCLDVGSSTGGFTEVLLAHGAALVFAVDVGRDQLHASLRGHPKIVSMEETDIRKLEGTRLPQRPDVVVIDASF
ISLKQVLPAALSLAASPMSLLALIKPQFEAPSKRGIVRDAKVHRAVCDDAVAFAASLGCRDIEVFASSIAGGDGNVEFFL
GAKRG

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 25977; Mature: 25846

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSSDSTPRKRADVVLVERGLFDSRARAQAAIEAGLVVADGKPVTKVSEPIALDAVLEA
CCCCCCCCCCHHCCEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEHEECC
QPAHPWVSRGGVKLAGALERYLIEIEDHVCLDVGSSTGGFTEVLLAHGAALVFAVDVGRD
CCCCCHHHCCCEEHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCEEEEEEECCHH
QLHASLRGHPKIVSMEETDIRKLEGTRLPQRPDVVVIDASFISLKQVLPAALSLAASPMS
HHHHHHCCCCEEEEECHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCHHH
LLALIKPQFEAPSKRGIVRDAKVHRAVCDDAVAFAASLGCRDIEVFASSIAGGDGNVEFF
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEE
LGAKRG
EECCCC
>Mature Secondary Structure 
AKSSDSTPRKRADVVLVERGLFDSRARAQAAIEAGLVVADGKPVTKVSEPIALDAVLEA
CCCCCCCCCHHCCEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEHEECC
QPAHPWVSRGGVKLAGALERYLIEIEDHVCLDVGSSTGGFTEVLLAHGAALVFAVDVGRD
CCCCCHHHCCCEEHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCEEEEEEECCHH
QLHASLRGHPKIVSMEETDIRKLEGTRLPQRPDVVVIDASFISLKQVLPAALSLAASPMS
HHHHHHCCCCEEEEECHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCHHH
LLALIKPQFEAPSKRGIVRDAKVHRAVCDDAVAFAASLGCRDIEVFASSIAGGDGNVEFF
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEE
LGAKRG
EECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]