| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192289393
Identifier: 192289393
GI number: 192289393
Start: 1031946
End: 1033631
Strand: Reverse
Name: 192289393
Synonym: Rpal_0965
Alternate gene names: NA
Gene position: 1033631-1031946 (Counterclockwise)
Preceding gene: 192289394
Following gene: 192289391
Centisome position: 17.99
GC content: 70.52
Gene sequence:
>1686_bases ATGTCCGACAAGCCGAGATCCTTCTTTGGCGTCTTTACCGAGCGCGGCCCGCTGGGCGCGCTCGCGGTCGCCGGCGTGCT GCTGTTCGGCATCGTCGGGCCGGCCTCGGCGCAGTTCTTCGATTTCGGCGGCCCGCCGCCCGCCCGTCAGCAGCGTGGCG GCGGAGGTGGCGGCGGATTCGGCTGGTTCGGCAACGACGTGTTCCAGCCGTTCCATCAGAACCAGCCGCAGCGCCGCGCC GCACCACGCGAGGACTATTCCAAGGCACCGGCACCGGAGAAACGCGAGACGATCCCGGACCGCAACGTGCTGGTGCTCGG CGACTCGATGGCCGACTGGCTCGGCTACGGCCTGGAGCAGGCTTACGCCGAGCAGCCCGAAATGGGCGTGGTGCGCAAGT TCAAGACCATCTCGGGCCTGCTCCGCTACGCGCCGAAGGGCGAGCCGTCCGACTGGGTCGCCGCCGCCAAGGAGGTGATC GCCCAGGAGAACCCCGACGCGATCGTGGTGATGCTCGGCCTGTCGGACCGGATTGCGATCCGCGAGCAGGCGACGCCCGA GAAGGACAAGAAGAAGGACGACAAGGCCGCCGCCAAGCCCGGCGAAGAGGCCAAGCCGGACGCCAAAGCGGACAACAAGA CCGACGCGAAGCCCGACGGCAAAACCGACGCCAAGCCGGACGACAAGGCTGCCGACAACGCCGCCGCGGATGACGACGAG GATGACGACGACTCGCTGCGGATCATGACCGAGAAGGGCAAGCGCGCCGCAGGCGGCGTCGCCCAGTTCCGCGAGGATCG CTGGTCGGAGCTCTACGCCAAGAAGATCGAGGACCTGATCAACGTCCTCAAGGCCAAGAACGTCCCGATCCTGTGGGTGG GCCTGCCGGCGGTGCGCGGCACCAAGGCGACCTCGGACATGCAGTTCCTCAACGCGCTGTATCGCGACGGCGCTGCCAAG GCCGGCATCACCTATGTTGACGTCTGGGACGGCTTCGTCGACGAAGGCGGCCGCTACGTGTTGCAGGGCCCGGACTTCGA AGGCCAGATCCGCCGGCTGCGCTCGTATGACGGCGTGTATTTCACCAAGGCCGGCGCCCGCAAGCTGGCGCATTACGCCG AGCGCGAGATCGCCCGGCTACTGGCCGCGCGCAGCGGTCCGATCGCACTGCCGACAGAACCAGCCGCGCCCGACACGGCC GCCAAGCCGCCGGCCGGACCGGCGCCGCGTCCCGCCGCCGGTCCGATCCTGCCGCTGGTTGCTTCTTCGGTGTCGACCGA CCGCCTGCTCGGCGGCCCAGGCACCCAGCCCGCGCCGGTCGATGCGCTGGTCGCCCGCACTCTGGTGAAAGGCGAGCCGC TGTCGGCGCCCGCCGGCCGCGCCGACGACGACGTCTGGCCGCGGCGTGAAGTCTCGATCGAAAAGGCCCAGGAGCCGCCG CCGCCGAAGGAGCAGCCGAAGCCGGAGACCCCGGTGGCGAGCGCCAAGCCCAGCGGCAGCGCGCCGAGCGCTTCGGCGGG ATCGCAGCCGCAGCAGCAACAACAGCAGCGCCGTGTCGCCCGCTCTGCTCCGCCGCCCCCGCCGCCGACCGCGTCCGGTT TCTTCGGCTTCGGCGGCCCGCCGCAGCAACAAGGCCGCCGCGCCCCGCCGCCGAGCGCGTCGGGCTTCTTCTCGATCTTC CGCTGA
Upstream 100 bases:
>100_bases ACCGCCTTATGGAGCCGGCGAAAGCTGCCCGGTTGCGGCCCGAATCCGCTAGTATAGGGATCAGCTTCCGTTTTTCCGGT GGCGATTGCGCAAGATCCGC
Downstream 100 bases:
>100_bases CGCAAGATTCGAGATGCGCGGGACCATCCCGCGCACCTCATCGCAATGACCGCAACGCGGCTTAAGCGCCCTTACAAAAT CAGCCCGCCGTCGACCACCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 561; Mature: 560
Protein sequence:
>561_residues MSDKPRSFFGVFTERGPLGALAVAGVLLFGIVGPASAQFFDFGGPPPARQQRGGGGGGGFGWFGNDVFQPFHQNQPQRRA APREDYSKAPAPEKRETIPDRNVLVLGDSMADWLGYGLEQAYAEQPEMGVVRKFKTISGLLRYAPKGEPSDWVAAAKEVI AQENPDAIVVMLGLSDRIAIREQATPEKDKKKDDKAAAKPGEEAKPDAKADNKTDAKPDGKTDAKPDDKAADNAAADDDE DDDDSLRIMTEKGKRAAGGVAQFREDRWSELYAKKIEDLINVLKAKNVPILWVGLPAVRGTKATSDMQFLNALYRDGAAK AGITYVDVWDGFVDEGGRYVLQGPDFEGQIRRLRSYDGVYFTKAGARKLAHYAEREIARLLAARSGPIALPTEPAAPDTA AKPPAGPAPRPAAGPILPLVASSVSTDRLLGGPGTQPAPVDALVARTLVKGEPLSAPAGRADDDVWPRREVSIEKAQEPP PPKEQPKPETPVASAKPSGSAPSASAGSQPQQQQQQRRVARSAPPPPPPTASGFFGFGGPPQQQGRRAPPPSASGFFSIF R
Sequences:
>Translated_561_residues MSDKPRSFFGVFTERGPLGALAVAGVLLFGIVGPASAQFFDFGGPPPARQQRGGGGGGGFGWFGNDVFQPFHQNQPQRRA APREDYSKAPAPEKRETIPDRNVLVLGDSMADWLGYGLEQAYAEQPEMGVVRKFKTISGLLRYAPKGEPSDWVAAAKEVI AQENPDAIVVMLGLSDRIAIREQATPEKDKKKDDKAAAKPGEEAKPDAKADNKTDAKPDGKTDAKPDDKAADNAAADDDE DDDDSLRIMTEKGKRAAGGVAQFREDRWSELYAKKIEDLINVLKAKNVPILWVGLPAVRGTKATSDMQFLNALYRDGAAK AGITYVDVWDGFVDEGGRYVLQGPDFEGQIRRLRSYDGVYFTKAGARKLAHYAEREIARLLAARSGPIALPTEPAAPDTA AKPPAGPAPRPAAGPILPLVASSVSTDRLLGGPGTQPAPVDALVARTLVKGEPLSAPAGRADDDVWPRREVSIEKAQEPP PPKEQPKPETPVASAKPSGSAPSASAGSQPQQQQQQRRVARSAPPPPPPTASGFFGFGGPPQQQGRRAPPPSASGFFSIF R >Mature_560_residues SDKPRSFFGVFTERGPLGALAVAGVLLFGIVGPASAQFFDFGGPPPARQQRGGGGGGGFGWFGNDVFQPFHQNQPQRRAA PREDYSKAPAPEKRETIPDRNVLVLGDSMADWLGYGLEQAYAEQPEMGVVRKFKTISGLLRYAPKGEPSDWVAAAKEVIA QENPDAIVVMLGLSDRIAIREQATPEKDKKKDDKAAAKPGEEAKPDAKADNKTDAKPDGKTDAKPDDKAADNAAADDDED DDDSLRIMTEKGKRAAGGVAQFREDRWSELYAKKIEDLINVLKAKNVPILWVGLPAVRGTKATSDMQFLNALYRDGAAKA GITYVDVWDGFVDEGGRYVLQGPDFEGQIRRLRSYDGVYFTKAGARKLAHYAEREIARLLAARSGPIALPTEPAAPDTAA KPPAGPAPRPAAGPILPLVASSVSTDRLLGGPGTQPAPVDALVARTLVKGEPLSAPAGRADDDVWPRREVSIEKAQEPPP PKEQPKPETPVASAKPSGSAPSASAGSQPQQQQQQRRVARSAPPPPPPTASGFFGFGGPPQQQGRRAPPPSASGFFSIFR
Specific function: Unknown
COG id: COG2845
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59826; Mature: 59694
Theoretical pI: Translated: 8.97; Mature: 8.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDKPRSFFGVFTERGPLGALAVAGVLLFGIVGPASAQFFDFGGPPPARQQRGGGGGGGF CCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHCCCCCCCCC GWFGNDVFQPFHQNQPQRRAAPREDYSKAPAPEKRETIPDRNVLVLGDSMADWLGYGLEQ CCCCHHHHHHHHCCCCHHHCCCHHHHHCCCCCCHHHCCCCCCEEEECCHHHHHHHHHHHH AYAEQPEMGVVRKFKTISGLLRYAPKGEPSDWVAAAKEVIAQENPDAIVVMLGLSDRIAI HHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEE REQATPEKDKKKDDKAAAKPGEEAKPDAKADNKTDAKPDGKTDAKPDDKAADNAAADDDE CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC DDDDSLRIMTEKGKRAAGGVAQFREDRWSELYAKKIEDLINVLKAKNVPILWVGLPAVRG CCCCCEEEEECCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC TKATSDMQFLNALYRDGAAKAGITYVDVWDGFVDEGGRYVLQGPDFEGQIRRLRSYDGVY CCCHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCEEEEECCCCHHHHHHHHHCCCEE FTKAGARKLAHYAEREIARLLAARSGPIALPTEPAAPDTAAKPPAGPAPRPAAGPILPLV EECHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH ASSVSTDRLLGGPGTQPAPVDALVARTLVKGEPLSAPAGRADDDVWPRREVSIEKAQEPP HCCCCCCHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCHHHCCCCC PPKEQPKPETPVASAKPSGSAPSASAGSQPQQQQQQRRVARSAPPPPPPTASGFFGFGGP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC PQQQGRRAPPPSASGFFSIFR CHHCCCCCCCCCCCCHHHHCC >Mature Secondary Structure SDKPRSFFGVFTERGPLGALAVAGVLLFGIVGPASAQFFDFGGPPPARQQRGGGGGGGF CCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHCCCCCCCCC GWFGNDVFQPFHQNQPQRRAAPREDYSKAPAPEKRETIPDRNVLVLGDSMADWLGYGLEQ CCCCHHHHHHHHCCCCHHHCCCHHHHHCCCCCCHHHCCCCCCEEEECCHHHHHHHHHHHH AYAEQPEMGVVRKFKTISGLLRYAPKGEPSDWVAAAKEVIAQENPDAIVVMLGLSDRIAI HHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEE REQATPEKDKKKDDKAAAKPGEEAKPDAKADNKTDAKPDGKTDAKPDDKAADNAAADDDE CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC DDDDSLRIMTEKGKRAAGGVAQFREDRWSELYAKKIEDLINVLKAKNVPILWVGLPAVRG CCCCCEEEEECCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC TKATSDMQFLNALYRDGAAKAGITYVDVWDGFVDEGGRYVLQGPDFEGQIRRLRSYDGVY CCCHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCEEEEECCCCHHHHHHHHHCCCEE FTKAGARKLAHYAEREIARLLAARSGPIALPTEPAAPDTAAKPPAGPAPRPAAGPILPLV EECHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH ASSVSTDRLLGGPGTQPAPVDALVARTLVKGEPLSAPAGRADDDVWPRREVSIEKAQEPP HCCCCCCHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCHHHCCCCC PPKEQPKPETPVASAKPSGSAPSASAGSQPQQQQQQRRVARSAPPPPPPTASGFFGFGGP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC PQQQGRRAPPPSASGFFSIFR CHHCCCCCCCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA