| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
Click here to switch to the map view.
The map label for this gene is 192289278
Identifier: 192289278
GI number: 192289278
Start: 899960
End: 900394
Strand: Reverse
Name: 192289278
Synonym: Rpal_0850
Alternate gene names: NA
Gene position: 900394-899960 (Counterclockwise)
Preceding gene: 192289279
Following gene: 192289277
Centisome position: 15.68
GC content: 65.52
Gene sequence:
>435_bases ATGCCTGCCCATAGCCGCCCCTATCCGCTCGTCGACCGGCTGCTCGAAACCTTCGCCGACTGGCTGAAGCATCGCCGTGA AGTCGTCGAGATGTGCCAATTCGACTCCGCCGAATTCGGCCGTATCGCACACGACCTCGGCGTCACCGCATCGGATCTCG ACGAGCTGGTCCGCCAGGGTCCGCACAAGGTCGAAGAGCTGCCGCAGCTCCTCAAGGTCCTCGGGATCGACGAGGACGCG ATCGCCCGCGCCCAACCGCTGGTGATGCGCGATCTCGAGCGCGTCTGCGCGCTGTGCCGCCACAAGGCGGAATGCGATCA CGACATCGCCGACGGTTCGCTGGCCGAACACTACCAGGCGTACTGCGCCAACAAGGTGACGCTCGACGCGCTGGACAAGG ACTTCCACGTCGCGCCCGGCACGGTCCGTCACTAA
Upstream 100 bases:
>100_bases CCTCCGGTGATGTCCGGGGTGTTGTGCTTGATCTATCGCAATGTGATTGGGGGTGCGTTCGGCGATTGTACCACCACCGT CAGACATCTTGGAGGGCGAA
Downstream 100 bases:
>100_bases TCGTGTCGATGTCGCAGGGTTGGTTCCGGCTCCCGGCCACTGGATTTCTGATCGTCGCGATGCTGCTGACGGTTCGGCTG CACCGCGCCGACGCTGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 144; Mature: 143
Protein sequence:
>144_residues MPAHSRPYPLVDRLLETFADWLKHRREVVEMCQFDSAEFGRIAHDLGVTASDLDELVRQGPHKVEELPQLLKVLGIDEDA IARAQPLVMRDLERVCALCRHKAECDHDIADGSLAEHYQAYCANKVTLDALDKDFHVAPGTVRH
Sequences:
>Translated_144_residues MPAHSRPYPLVDRLLETFADWLKHRREVVEMCQFDSAEFGRIAHDLGVTASDLDELVRQGPHKVEELPQLLKVLGIDEDA IARAQPLVMRDLERVCALCRHKAECDHDIADGSLAEHYQAYCANKVTLDALDKDFHVAPGTVRH >Mature_143_residues PAHSRPYPLVDRLLETFADWLKHRREVVEMCQFDSAEFGRIAHDLGVTASDLDELVRQGPHKVEELPQLLKVLGIDEDAI ARAQPLVMRDLERVCALCRHKAECDHDIADGSLAEHYQAYCANKVTLDALDKDFHVAPGTVRH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16293; Mature: 16161
Theoretical pI: Translated: 5.49; Mature: 5.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 3.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAHSRPYPLVDRLLETFADWLKHRREVVEMCQFDSAEFGRIAHDLGVTASDLDELVRQG CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCC PHKVEELPQLLKVLGIDEDAIARAQPLVMRDLERVCALCRHKAECDHDIADGSLAEHYQA CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH YCANKVTLDALDKDFHVAPGTVRH HHHCCHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure PAHSRPYPLVDRLLETFADWLKHRREVVEMCQFDSAEFGRIAHDLGVTASDLDELVRQG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCC PHKVEELPQLLKVLGIDEDAIARAQPLVMRDLERVCALCRHKAECDHDIADGSLAEHYQA CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH YCANKVTLDALDKDFHVAPGTVRH HHHCCHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA