| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192289183
Identifier: 192289183
GI number: 192289183
Start: 797252
End: 797899
Strand: Reverse
Name: 192289183
Synonym: Rpal_0754
Alternate gene names: NA
Gene position: 797899-797252 (Counterclockwise)
Preceding gene: 192289184
Following gene: 192289181
Centisome position: 13.89
GC content: 66.36
Gene sequence:
>648_bases ATGGACGCCCGCAGCCCTGACGATCGCCGCACCGCCTTCCCTGCGCTCGACACGGTCGAGGCGCTGGAGGCGATCTACGG CGTACCCAACGACGCCTCCACCGAAAAAGTGGCACACTGGATCACGCCGCCCTATCGCACCCTGATCGAAAAATCGCCGT TCGCCGCGCTCGCCACGGTGGGGCCGGAGGGGCTCGACTGTTCGCCGCGCGGCGACGTGCCGGGCTTTATTCGTGTGCAT GACGACACCACGCTGCTGATCCCGGATCGCCGCGGCAACAACCGGATCGATTCCTTGCGCAACGTGGTGCGCGATCCGCG CATCGCGCTGATGCTGCTGATCCCGGGCTCGATCAACGCGCTGCGCATCAACGGCCGCGGCTACATCACCGCCGACGAGG CCTTACGGATGTCGTTCGACGTCGAAGGCAAGGCGCCACGCACCGTCATCGTGATGACGGTCGAGGAGATCTACTTTCAG TGCGGCCGTGCGCTGATCCGCTCCGGCCTGTGGGACCCGAGCAAACAAGTCGCGCAGGACTCGCTGCCGACGCCCGGCGA AATCCTCGCTTCGATGACCGAAGGCCGCGTCGGCGGCGAAGATTATGACCGCGCCTGGCCGGAACGCGCCAAGGCGTCGA TGTGGTAG
Upstream 100 bases:
>100_bases GACCGCGTCGGGCGCAGCGTTGCGGCGCATCCCGACGTCACCATCAGCAATGTCGGCGACCCGATCGCCCACGCCCGAGA CTTGTTGGAGATCATCCGCC
Downstream 100 bases:
>100_bases CGGGCGCCCCTTTGCTCCATCATTGAACTGGCATTATCTCGCTGTCCGCTCAATTCTCTCTGAGGCCGGCCTCCTCGATC ACGCGGCTCCACTTCGCGGT
Product: pyridoxamine 5'-phosphate oxidase-like FMN-binding protein
Products: NA
Alternate protein names: Phosphohydrolase; Pyridoxamine 5-Phosphate Oxidase; Pyridoxamine 5-Phosphate Oxidase-Like Protein; Pyridoxamine 5-Phosphate Oxidase-Related Protein; NTP Pyrophosphohydrolase; Pyridoxine Biosynthesis Protein; Phenylacetate-CoA Oxygenase/Reductase PaaK Subunit; Transcriptional Regulator AraC Family; Pyridoxamine 5-Phosphate Oxidase Family; Fmn Flavoprotein; Pyridoxamine 5\-Phosphate Oxidase Family Protein; Hydrolase; Pyridoxamine 5-Phosphate Oxidase-Related
Number of amino acids: Translated: 215; Mature: 215
Protein sequence:
>215_residues MDARSPDDRRTAFPALDTVEALEAIYGVPNDASTEKVAHWITPPYRTLIEKSPFAALATVGPEGLDCSPRGDVPGFIRVH DDTTLLIPDRRGNNRIDSLRNVVRDPRIALMLLIPGSINALRINGRGYITADEALRMSFDVEGKAPRTVIVMTVEEIYFQ CGRALIRSGLWDPSKQVAQDSLPTPGEILASMTEGRVGGEDYDRAWPERAKASMW
Sequences:
>Translated_215_residues MDARSPDDRRTAFPALDTVEALEAIYGVPNDASTEKVAHWITPPYRTLIEKSPFAALATVGPEGLDCSPRGDVPGFIRVH DDTTLLIPDRRGNNRIDSLRNVVRDPRIALMLLIPGSINALRINGRGYITADEALRMSFDVEGKAPRTVIVMTVEEIYFQ CGRALIRSGLWDPSKQVAQDSLPTPGEILASMTEGRVGGEDYDRAWPERAKASMW >Mature_215_residues MDARSPDDRRTAFPALDTVEALEAIYGVPNDASTEKVAHWITPPYRTLIEKSPFAALATVGPEGLDCSPRGDVPGFIRVH DDTTLLIPDRRGNNRIDSLRNVVRDPRIALMLLIPGSINALRINGRGYITADEALRMSFDVEGKAPRTVIVMTVEEIYFQ CGRALIRSGLWDPSKQVAQDSLPTPGEILASMTEGRVGGEDYDRAWPERAKASMW
Specific function: Unknown
COG id: COG3576
COG function: function code R; Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23747; Mature: 23747
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDARSPDDRRTAFPALDTVEALEAIYGVPNDASTEKVAHWITPPYRTLIEKSPFAALATV CCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHCCCCCEEEEEC GPEGLDCSPRGDVPGFIRVHDDTTLLIPDRRGNNRIDSLRNVVRDPRIALMLLIPGSINA CCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCCCE LRINGRGYITADEALRMSFDVEGKAPRTVIVMTVEEIYFQCGRALIRSGLWDPSKQVAQD EEECCCEEEEHHHHEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHC SLPTPGEILASMTEGRVGGEDYDRAWPERAKASMW CCCCCHHHHHHHHCCCCCCCHHHHHCHHHHHCCCC >Mature Secondary Structure MDARSPDDRRTAFPALDTVEALEAIYGVPNDASTEKVAHWITPPYRTLIEKSPFAALATV CCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHCCCCCEEEEEC GPEGLDCSPRGDVPGFIRVHDDTTLLIPDRRGNNRIDSLRNVVRDPRIALMLLIPGSINA CCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCCCE LRINGRGYITADEALRMSFDVEGKAPRTVIVMTVEEIYFQCGRALIRSGLWDPSKQVAQD EEECCCEEEEHHHHEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHC SLPTPGEILASMTEGRVGGEDYDRAWPERAKASMW CCCCCHHHHHHHHCCCCCCCHHHHHCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA