Click here to switch to the map view.

The map label for this gene is ygiQ [C]

Identifier: 192289176

GI number: 192289176

Start: 787130

End: 789163

Strand: Reverse

Name: ygiQ [C]

Synonym: Rpal_0746

Alternate gene names: 192289176

Gene position: 789163-787130 (Counterclockwise)

Preceding gene: 192289177

Following gene: 192289170

Centisome position: 13.74

GC content: 64.75

Gene sequence:

>2034_bases
ATGCAGACCTCTATTGATACTGCCCCGCCGCTGATGTCCCGGTTCCGCCCCAGTGCGGCCCCGCGCAAGCCCGCGCCGTT
CCTGCCGATGAGCCGGGCCGAGATGGATAAGCTCGGCTGGGATGCGTGCGACATCGTCTTGGTGACCGGCGACGCTTACG
TCGACCATCCGAGCTTCGGCATGGCGATCATCGGCCGCCTCCTTGAATCCCAGGGTTTCCGCGTCGGCATCATCTCGCAA
CCGGATTGGCAGTCCGCCGAACCGTTTAAGGTGCTTGGCAAGCCGCGGGTGTTCTTCGGCGTCACCGGCGGCAACATGGA
CTCGATGGTCAACCGCTACACGGCGGACCGCAGGCTGCGCCATGACGACGCCTACACGCCGAACGGCGAAGGCGGCAAAC
GGCCGGACCGCTGCACGCTGGTCTATGCGCAGCGCTGCCGCGAAGCGTTCAAAGACGTGCCGATCATTCTCGGCGGCATC
GAGGCCTCGCTGCGCCGGATCGCGCATTACGATTACTGGTCCGACAAAGTTCGTCGCTCGGTGCTGGCGGACGCCAAGGC
CGATCTGTTGCTGTACGGCAATGCCGAGCGCGCGGTTATCGAAGTCGCACATCGTTTGGCTGCGGGTGAGGCGCCACGCG
AACTTGAGGATATCCGCGGTGTCGCGCTGTTCCGTCGCGTGCCTGAGAACACGATCGAGCTGCACGCCGACGATCTCGAC
GCCGCCGACGAAGGCGCGCGCCAGGTGCGTGGCGACGTCGTCATCCGGCTGCCGAGCTGTGAGCAGGTCGAGCAGGACAA
GGAAGCCTATGCCCGCGCCTCGCGCGTGCTGCACCGCGAAAGCAACCCCGGTAACGCGCGGCCCTTAGTGCAGCGTCACG
GCGACCGCGACCTGTGGCTCAATCCGCCGCCGATTCCGCTGACGACTGAAGAAATGGACTCGGTCTACGATCTGCCCTAC
GCCCGCGCCCCGCATCCGTCCTACGGCAATGCCAAGATCCCGGCGTGGGACATGATCAAGACCTCGGTGACGATCATGCG
CGGCTGCTTCGGCGGCTGTACCTTCTGCTCGATCACCGAGCACGAAGGCCGCATCATCCAGAGCCGGTCGGAAGCCTCGA
TCCTGCAAGAGATCGAGAAGATTCGCGACAAGACGCCAGGCTTCACCGGCGTGATCTCGGATATCGGCGGGCCTACCGCG
AATATGTACCGGATGGCCTGCAAGGACCCGAATATCGAGTCGTCCTGCCGCAAGCCATCCTGCGTGTTTCCGGACATTTG
CCCCAACCTCAACACCTCGCACGATGACCTGATCCGGCTGTACCGCAAAGTGCGCGAGGTGAAGGGCATCAAGAGGGTGA
TGGTGGCATCGGGCGTGCGCTACGACCTCGCCGTCAAGAGCCCCGCCTACATCAAAGAACTGGTGAGCCATCACGTCGGC
GGCTACTTGAAGATCGCGCCGGAGCACACCGAGCGCGGCCCGCTCGACAAGATGATGAAGCCGGGCATCGGCACCTATCA
TCGCTTCAAGCAAATGTTCGAGGCCGCCGCCAAACAGGCCGGCAAACAGTACTATCTGATCCCGTATTTCATCGCGGCTC
ATCCGGGAACGACGGACGAGGATATGATGAACCTCGCGTTGTGGCTGAAGCGCAATCGCTACCGCGCCGACCAGGTGCAG
ACCTTCCTGCCCTCGCCGATGGCGACCGCGACTGCGATGTATCACAGCGGCGTCAACCCGCTGCGCGGGGTGCGCCACGG
CGCCAGCGAGCCGGTCGAGGCAATCAAGGGACTGCGGCAGCGCCGGCTACACAAGGCGTTCCTGCGCTATCACGATCCGG
ACAACTGGCCGGTGCTGCGCGAGGCATTGAAGGCAATGGGCCGTGCCGACCTGATCGGCTCGCGGCCTGACCAGCTGGTC
CCGGCGCATCAGCCGCCTGGGACCGGCAAAGCCGCCGGCACCCGCCGCCCGGTGCGCGGCGACGGACCGAAGCCGCAGCG
TTTCACCACCAAGGGCGTGCGGCTGGTCAAGTAA

Upstream 100 bases:

>100_bases
GGCGGCCGGCGATCTGCCGCCGCTGCCGGAGTGATCACAGCGGCGAGACGGCACGGACCTCGCCGTTGAACTTACCGCCC
CCCGGTCTTATGCCTGGGCG

Downstream 100 bases:

>100_bases
CCGCGCCCGTCGCGACCGCGGGCTTACGTCAGCAGCCCGCGCTTGCCTTCCTTCCAGCGCGCGAATTCGGTCTGCAGCAC
CGAAACATGCTCGTCCTCTT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 677; Mature: 677

Protein sequence:

>677_residues
MQTSIDTAPPLMSRFRPSAAPRKPAPFLPMSRAEMDKLGWDACDIVLVTGDAYVDHPSFGMAIIGRLLESQGFRVGIISQ
PDWQSAEPFKVLGKPRVFFGVTGGNMDSMVNRYTADRRLRHDDAYTPNGEGGKRPDRCTLVYAQRCREAFKDVPIILGGI
EASLRRIAHYDYWSDKVRRSVLADAKADLLLYGNAERAVIEVAHRLAAGEAPRELEDIRGVALFRRVPENTIELHADDLD
AADEGARQVRGDVVIRLPSCEQVEQDKEAYARASRVLHRESNPGNARPLVQRHGDRDLWLNPPPIPLTTEEMDSVYDLPY
ARAPHPSYGNAKIPAWDMIKTSVTIMRGCFGGCTFCSITEHEGRIIQSRSEASILQEIEKIRDKTPGFTGVISDIGGPTA
NMYRMACKDPNIESSCRKPSCVFPDICPNLNTSHDDLIRLYRKVREVKGIKRVMVASGVRYDLAVKSPAYIKELVSHHVG
GYLKIAPEHTERGPLDKMMKPGIGTYHRFKQMFEAAAKQAGKQYYLIPYFIAAHPGTTDEDMMNLALWLKRNRYRADQVQ
TFLPSPMATATAMYHSGVNPLRGVRHGASEPVEAIKGLRQRRLHKAFLRYHDPDNWPVLREALKAMGRADLIGSRPDQLV
PAHQPPGTGKAAGTRRPVRGDGPKPQRFTTKGVRLVK

Sequences:

>Translated_677_residues
MQTSIDTAPPLMSRFRPSAAPRKPAPFLPMSRAEMDKLGWDACDIVLVTGDAYVDHPSFGMAIIGRLLESQGFRVGIISQ
PDWQSAEPFKVLGKPRVFFGVTGGNMDSMVNRYTADRRLRHDDAYTPNGEGGKRPDRCTLVYAQRCREAFKDVPIILGGI
EASLRRIAHYDYWSDKVRRSVLADAKADLLLYGNAERAVIEVAHRLAAGEAPRELEDIRGVALFRRVPENTIELHADDLD
AADEGARQVRGDVVIRLPSCEQVEQDKEAYARASRVLHRESNPGNARPLVQRHGDRDLWLNPPPIPLTTEEMDSVYDLPY
ARAPHPSYGNAKIPAWDMIKTSVTIMRGCFGGCTFCSITEHEGRIIQSRSEASILQEIEKIRDKTPGFTGVISDIGGPTA
NMYRMACKDPNIESSCRKPSCVFPDICPNLNTSHDDLIRLYRKVREVKGIKRVMVASGVRYDLAVKSPAYIKELVSHHVG
GYLKIAPEHTERGPLDKMMKPGIGTYHRFKQMFEAAAKQAGKQYYLIPYFIAAHPGTTDEDMMNLALWLKRNRYRADQVQ
TFLPSPMATATAMYHSGVNPLRGVRHGASEPVEAIKGLRQRRLHKAFLRYHDPDNWPVLREALKAMGRADLIGSRPDQLV
PAHQPPGTGKAAGTRRPVRGDGPKPQRFTTKGVRLVK
>Mature_677_residues
MQTSIDTAPPLMSRFRPSAAPRKPAPFLPMSRAEMDKLGWDACDIVLVTGDAYVDHPSFGMAIIGRLLESQGFRVGIISQ
PDWQSAEPFKVLGKPRVFFGVTGGNMDSMVNRYTADRRLRHDDAYTPNGEGGKRPDRCTLVYAQRCREAFKDVPIILGGI
EASLRRIAHYDYWSDKVRRSVLADAKADLLLYGNAERAVIEVAHRLAAGEAPRELEDIRGVALFRRVPENTIELHADDLD
AADEGARQVRGDVVIRLPSCEQVEQDKEAYARASRVLHRESNPGNARPLVQRHGDRDLWLNPPPIPLTTEEMDSVYDLPY
ARAPHPSYGNAKIPAWDMIKTSVTIMRGCFGGCTFCSITEHEGRIIQSRSEASILQEIEKIRDKTPGFTGVISDIGGPTA
NMYRMACKDPNIESSCRKPSCVFPDICPNLNTSHDDLIRLYRKVREVKGIKRVMVASGVRYDLAVKSPAYIKELVSHHVG
GYLKIAPEHTERGPLDKMMKPGIGTYHRFKQMFEAAAKQAGKQYYLIPYFIAAHPGTTDEDMMNLALWLKRNRYRADQVQ
TFLPSPMATATAMYHSGVNPLRGVRHGASEPVEAIKGLRQRRLHKAFLRYHDPDNWPVLREALKAMGRADLIGSRPDQLV
PAHQPPGTGKAAGTRRPVRGDGPKPQRFTTKGVRLVK

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0313 family [H]

Homologues:

Organism=Escherichia coli, GI48994917, Length=659, Percent_Identity=64.1881638846737, Blast_Score=884, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR020612
- InterPro:   IPR007197
- InterPro:   IPR013704
- InterPro:   IPR022946 [H]

Pfam domain/function: PF04055 Radical_SAM; PF08497 Radical_SAM_N [H]

EC number: NA

Molecular weight: Translated: 75668; Mature: 75668

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS01278 UPF0004

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTSIDTAPPLMSRFRPSAAPRKPAPFLPMSRAEMDKLGWDACDIVLVTGDAYVDHPSFG
CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEECCCEECCCCHH
MAIIGRLLESQGFRVGIISQPDWQSAEPFKVLGKPRVFFGVTGGNMDSMVNRYTADRRLR
HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHC
HDDAYTPNGEGGKRPDRCTLVYAQRCREAFKDVPIILGGIEASLRRIAHYDYWSDKVRRS
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCHHHHHHHHH
VLADAKADLLLYGNAERAVIEVAHRLAAGEAPRELEDIRGVALFRRVPENTIELHADDLD
HHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
AADEGARQVRGDVVIRLPSCEQVEQDKEAYARASRVLHRESNPGNARPLVQRHGDRDLWL
CHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCC
NPPPIPLTTEEMDSVYDLPYARAPHPSYGNAKIPAWDMIKTSVTIMRGCFGGCTFCSITE
CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
HEGRIIQSRSEASILQEIEKIRDKTPGFTGVISDIGGPTANMYRMACKDPNIESSCRKPS
CCCCEECCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHCCCCCCHHHCCCCC
CVFPDICPNLNTSHDDLIRLYRKVREVKGIKRVMVASGVRYDLAVKSPAYIKELVSHHVG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCC
GYLKIAPEHTERGPLDKMMKPGIGTYHRFKQMFEAAAKQAGKQYYLIPYFIAAHPGTTDE
CEEEECCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCHH
DMMNLALWLKRNRYRADQVQTFLPSPMATATAMYHSGVNPLRGVRHGASEPVEAIKGLRQ
HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHH
RRLHKAFLRYHDPDNWPVLREALKAMGRADLIGSRPDQLVPAHQPPGTGKAAGTRRPVRG
HHHHHHHHHHCCCCCCHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DGPKPQRFTTKGVRLVK
CCCCCCCCCCCCCEECC
>Mature Secondary Structure
MQTSIDTAPPLMSRFRPSAAPRKPAPFLPMSRAEMDKLGWDACDIVLVTGDAYVDHPSFG
CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEECCCEECCCCHH
MAIIGRLLESQGFRVGIISQPDWQSAEPFKVLGKPRVFFGVTGGNMDSMVNRYTADRRLR
HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHC
HDDAYTPNGEGGKRPDRCTLVYAQRCREAFKDVPIILGGIEASLRRIAHYDYWSDKVRRS
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCHHHHHHHHH
VLADAKADLLLYGNAERAVIEVAHRLAAGEAPRELEDIRGVALFRRVPENTIELHADDLD
HHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
AADEGARQVRGDVVIRLPSCEQVEQDKEAYARASRVLHRESNPGNARPLVQRHGDRDLWL
CHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCC
NPPPIPLTTEEMDSVYDLPYARAPHPSYGNAKIPAWDMIKTSVTIMRGCFGGCTFCSITE
CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
HEGRIIQSRSEASILQEIEKIRDKTPGFTGVISDIGGPTANMYRMACKDPNIESSCRKPS
CCCCEECCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHCCCCCCHHHCCCCC
CVFPDICPNLNTSHDDLIRLYRKVREVKGIKRVMVASGVRYDLAVKSPAYIKELVSHHVG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCC
GYLKIAPEHTERGPLDKMMKPGIGTYHRFKQMFEAAAKQAGKQYYLIPYFIAAHPGTTDE
CEEEECCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCHH
DMMNLALWLKRNRYRADQVQTFLPSPMATATAMYHSGVNPLRGVRHGASEPVEAIKGLRQ
HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHH
RRLHKAFLRYHDPDNWPVLREALKAMGRADLIGSRPDQLVPAHQPPGTGKAAGTRRPVRG
HHHHHHHHHHCCCCCCHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DGPKPQRFTTKGVRLVK
CCCCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA