| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192289170
Identifier: 192289170
GI number: 192289170
Start: 777421
End: 778188
Strand: Reverse
Name: 192289170
Synonym: Rpal_0740
Alternate gene names: NA
Gene position: 778188-777421 (Counterclockwise)
Preceding gene: 192289176
Following gene: 192289166
Centisome position: 13.55
GC content: 65.23
Gene sequence:
>768_bases ATGGCTTCGAAGCTCACCGGTGGTGATCTACAGATCATCACCCGGATTGCCGTGTTTCGCGGATTGAAGGCGGAGACCGT CGCGCACATGATCGCGCCGGCCACCGCGATCAGCGTGCGGGCGCGCGAGTCGATCGCCCGTCAGGACGAGCCGGCGACCG CGTTCTTCATCGTCGTCGGCGGCTGGGTGAAGCTGTTTCGCAGTAATCTGGCGGGCGATGAGGCGGTGATCGAGATCATG AGCCGCGGCGGCAGTTTTGCCGAAGCCGCGGCGCTGACCGGCCACCGTTATTTGGCAAACGCCGAGGCTGTCACGGACGC CCGTGTCGCGCGGATTCCCGCCGATCATTTGGTCCGCTGTATCCGCGCCAATCCAGACATCTCGGTGCCGATGATCGCCT CGATCTGCCAGCACATGCATCATTTGGTTCAGCGGGTCGAGCAGCTCAAGGCACAGAGCGGCGTGCAGCGGCTCGCCGAA TTCCTCGCCTCGCTGGCGATCACCGAGCAAGGCTCCTGCGCGCTGGTGCTGCCCTACGACAAGGCGCTGATCGCCGGCGA ATTGGGGCTGACGCCGGAATCGCTGTCGCGGGCCTTCGCCAAGCTGCGCAGCATCGGCGTCACCGTCGATGCCTCGCAAG TCGCGGTGCGCGATGTCGCAAGGTTGCGCAAGCTGGCCACCGATGGCCGCAGCGCAGTGCGTGGCAAACTGCAGGCCGTG CGTTCAAGCGTGATTGCGGATCGATCCGTACTACGCCGGCGCCAGTGA
Upstream 100 bases:
>100_bases CAATTTCGTACCGGAATGCACAAAATAGTTGATGGCGATCAAGGAAGCGCGAAACACGCCTGGGGTGTAGTTGGCGTAAC CAAGATTGGAAACGCTCTCG
Downstream 100 bases:
>100_bases GGCGAACAGCTCGGCCGTGATGCGGCTGGCCAGAGCCGCCGCAACGACGCGCCGGTAGTTGGCCGGCATCAGCGTCGTCC GCATCGGCTGCACCTGCTTC
Product: Crp/Fnr family transcriptional regulator
Products: NA
Alternate protein names: Crp/FNR Family Transcriptional Regulator; Crp/Fnr Family Transcriptional Regulator; CRP/FNR Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Activator FtrB; Crp Family Transcriptional Regulator; Regulator Of Biofilm Formation Fnr Family; Transcription Regulator Protein Crp/Fnr Family; Transcription Regulator; Transcriptional Regulator Dnr; Cyclic AMP Receptor Protein; CRP/FNR-Like Transcriptional Regulator; Transcriptional Regulator DnrS; CRP Family Transcriptional Regulator; Transcriptional Regulator Dnr Type; Transcriptional Activator; DnrE Protein; Regulatory Protein; Fnr-Like Transcriptional Activator; Crp Family Regulatory Protein; DNR Protein; Transcription Regulator Protein; Transcriptional Regulator Dnr-Type; Fnr-Like Regulatory Protein; FNR-Like Transcriptional Regulator; CAMP-Bindin Transcriptional Regulator; Transcriptional Regulator CAP/Crp Family; Transcriptional Regulator Dnr/Nnr Type
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MASKLTGGDLQIITRIAVFRGLKAETVAHMIAPATAISVRARESIARQDEPATAFFIVVGGWVKLFRSNLAGDEAVIEIM SRGGSFAEAAALTGHRYLANAEAVTDARVARIPADHLVRCIRANPDISVPMIASICQHMHHLVQRVEQLKAQSGVQRLAE FLASLAITEQGSCALVLPYDKALIAGELGLTPESLSRAFAKLRSIGVTVDASQVAVRDVARLRKLATDGRSAVRGKLQAV RSSVIADRSVLRRRQ
Sequences:
>Translated_255_residues MASKLTGGDLQIITRIAVFRGLKAETVAHMIAPATAISVRARESIARQDEPATAFFIVVGGWVKLFRSNLAGDEAVIEIM SRGGSFAEAAALTGHRYLANAEAVTDARVARIPADHLVRCIRANPDISVPMIASICQHMHHLVQRVEQLKAQSGVQRLAE FLASLAITEQGSCALVLPYDKALIAGELGLTPESLSRAFAKLRSIGVTVDASQVAVRDVARLRKLATDGRSAVRGKLQAV RSSVIADRSVLRRRQ >Mature_254_residues ASKLTGGDLQIITRIAVFRGLKAETVAHMIAPATAISVRARESIARQDEPATAFFIVVGGWVKLFRSNLAGDEAVIEIMS RGGSFAEAAALTGHRYLANAEAVTDARVARIPADHLVRCIRANPDISVPMIASICQHMHHLVQRVEQLKAQSGVQRLAEF LASLAITEQGSCALVLPYDKALIAGELGLTPESLSRAFAKLRSIGVTVDASQVAVRDVARLRKLATDGRSAVRGKLQAVR SSVIADRSVLRRRQ
Specific function: Unknown
COG id: COG0664
COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27408; Mature: 27277
Theoretical pI: Translated: 10.93; Mature: 10.93
Prosite motif: PS50042 CNMP_BINDING_3 ; PS51063 HTH_CRP_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASKLTGGDLQIITRIAVFRGLKAETVAHMIAPATAISVRARESIARQDEPATAFFIVVG CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHH GWVKLFRSNLAGDEAVIEIMSRGGSFAEAAALTGHRYLANAEAVTDARVARIPADHLVRC HHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCHHHHCCCHHHHHHHHHHCCHHHHHHH IRANPDISVPMIASICQHMHHLVQRVEQLKAQSGVQRLAEFLASLAITEQGSCALVLPYD HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC KALIAGELGLTPESLSRAFAKLRSIGVTVDASQVAVRDVARLRKLATDGRSAVRGKLQAV CHHHHCCCCCCHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH RSSVIADRSVLRRRQ HHHHHHHHHHHHCCC >Mature Secondary Structure ASKLTGGDLQIITRIAVFRGLKAETVAHMIAPATAISVRARESIARQDEPATAFFIVVG CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHH GWVKLFRSNLAGDEAVIEIMSRGGSFAEAAALTGHRYLANAEAVTDARVARIPADHLVRC HHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCHHHHCCCHHHHHHHHHHCCHHHHHHH IRANPDISVPMIASICQHMHHLVQRVEQLKAQSGVQRLAEFLASLAITEQGSCALVLPYD HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC KALIAGELGLTPESLSRAFAKLRSIGVTVDASQVAVRDVARLRKLATDGRSAVRGKLQAV CHHHHCCCCCCHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH RSSVIADRSVLRRRQ HHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA