Click here to switch to the map view.

The map label for this gene is secB [H]

Identifier: 192288735

GI number: 192288735

Start: 325765

End: 326238

Strand: Reverse

Name: secB [H]

Synonym: Rpal_0304

Alternate gene names: 192288735

Gene position: 326238-325765 (Counterclockwise)

Preceding gene: 192288739

Following gene: 192288730

Centisome position: 5.68

GC content: 62.24

Gene sequence:

>474_bases
ATGACCAACGGTAACGGCACGCCTCCCGAGGGTGCTCCTCCGCAACTCAATGTGCTGGCGCAGTACACCAAGGATCTGTC
GTTCGAGAATCCGAACGCTCCGGCGTCGCTCGCCCCGCAGCAGCAGCAGCCGGCGATCAACATCCAGATCAATGTCGGCG
CCAACAACGTCGGCGAGAACGAATACGAAGTCACGCTGTCGATCGAAGGCAAGGCCGAATCCGGCAGCAGCGTGCTGTTC
AGCTTCGAGCTGGCCTATGCGGGCGTGTTCCGGGTACTGAACGTGCCGCAGGAAAACCTGCATCCGCTGATCATGATCGA
ATGCCCGCGGCTGCTGTTCCCGTTTGCCCGTGAGATCATCGCCAGTGCGGTGCGCGACGGCGGGTTCCCGCCGCTGATGC
TCGATCCTGTCGATTTCATCGGCCTGTATCGCCAGAACCTCGAACGCGCCCAGCAGCAGGGTCAGCCGAGCTGA

Upstream 100 bases:

>100_bases
GGGGCGTATGATAGCCACTCGCCAAAGCACCTGCCCATTGTTGCGACGCCCTCTGCAAGTCGGCGGCCGCCACCCAAATC
CGCTTCCAGGAGAACCATCG

Downstream 100 bases:

>100_bases
TCCGGTCGCTGCTCACGCTCGCGACTTTTGCAATGCCCGGCCGATGCGCCGGGCATTGTCGTTTCAGGAAGACAAACGCT
CAGGCGCCGGCGGGCAGATA

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MTNGNGTPPEGAPPQLNVLAQYTKDLSFENPNAPASLAPQQQQPAINIQINVGANNVGENEYEVTLSIEGKAESGSSVLF
SFELAYAGVFRVLNVPQENLHPLIMIECPRLLFPFAREIIASAVRDGGFPPLMLDPVDFIGLYRQNLERAQQQGQPS

Sequences:

>Translated_157_residues
MTNGNGTPPEGAPPQLNVLAQYTKDLSFENPNAPASLAPQQQQPAINIQINVGANNVGENEYEVTLSIEGKAESGSSVLF
SFELAYAGVFRVLNVPQENLHPLIMIECPRLLFPFAREIIASAVRDGGFPPLMLDPVDFIGLYRQNLERAQQQGQPS
>Mature_156_residues
TNGNGTPPEGAPPQLNVLAQYTKDLSFENPNAPASLAPQQQQPAINIQINVGANNVGENEYEVTLSIEGKAESGSSVLFS
FELAYAGVFRVLNVPQENLHPLIMIECPRLLFPFAREIIASAVRDGGFPPLMLDPVDFIGLYRQNLERAQQQGQPS

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family [H]

Homologues:

Organism=Escherichia coli, GI1790038, Length=133, Percent_Identity=33.8345864661654, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003708 [H]

Pfam domain/function: PF02556 SecB [H]

EC number: NA

Molecular weight: Translated: 17076; Mature: 16945

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNGNGTPPEGAPPQLNVLAQYTKDLSFENPNAPASLAPQQQQPAINIQINVGANNVGEN
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCC
EYEVTLSIEGKAESGSSVLFSFELAYAGVFRVLNVPQENLHPLIMIECPRLLFPFAREII
EEEEEEEEECCCCCCCEEEEEEHHHHHHHHHHHCCCHHHCCEEEEEECCHHHHHHHHHHH
ASAVRDGGFPPLMLDPVDFIGLYRQNLERAQQQGQPS
HHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TNGNGTPPEGAPPQLNVLAQYTKDLSFENPNAPASLAPQQQQPAINIQINVGANNVGEN
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCC
EYEVTLSIEGKAESGSSVLFSFELAYAGVFRVLNVPQENLHPLIMIECPRLLFPFAREII
EEEEEEEEECCCCCCCEEEEEEHHHHHHHHHHHCCCHHHCCEEEEEECCHHHHHHHHHHH
ASAVRDGGFPPLMLDPVDFIGLYRQNLERAQQQGQPS
HHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA