| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192288697
Identifier: 192288697
GI number: 192288697
Start: 285062
End: 286228
Strand: Reverse
Name: 192288697
Synonym: Rpal_0266
Alternate gene names: NA
Gene position: 286228-285062 (Counterclockwise)
Preceding gene: 192288698
Following gene: 192288695
Centisome position: 4.98
GC content: 64.01
Gene sequence:
>1167_bases ATGGCGGCGATTACCACATCACCGCGACGATGGCTCCGCCGGCTGGCGGCCGCTGCCTTTGTGGCGATGCCGGCGTGGAC GCTTTGGAATCTCGCGGTGCCGTCGCACGCCGTTCGGATCGGGCCGGCACTTGTCGGCGTCACCCAGCAGGTGCCGTTCG ATCTTTCGCTGCACGGCTTCATCGACGGCGCACTGCAGAAAGCGGCCGTGCTGCGAATTGCGGACGCAATGCCGCTGCGG CGAACGCTGATTCGGCTCAACAATCAGATCGCGTATTCGTTGTTCGGCGAGATCACCGCCCCCGGCATCCTGATCGGGCG CGACGGTGAACTCGTGCAGCGCGGCTATCTCGAGGAATATTGCTCGCGCACGATCGGTCAGGCCGACACCATGGCGGATG CCGCGATTCCGCTGCTGCGGGACATTCAGGCCTACTATCGCGATCGCGGCAAACTGTTTCTCTACATCGTGACGCCGTCC AAAGTTGCCGATATGCCGGACAAGTTCACGCATCTGATCGTCTGTCCGAGCAGTCCGCAGGCGCGAGCGGAACTCGTCCC AGCCTACGTTGCGCGGCTACGGGCCGCAGGCATCGATGTGCTCGATCTGGTGACCTCGACCCATGCGATGCGGAGCGACG ACACGCCGCCGTTCCCGCGCGGTGGCATTCACTGGAACGAGTTGGCGATGGCGCGCGGCAGCCAGCAGATCGTGGATGCG ATCAACACCCGGGCGGGACACGAGTTGCTCACGCCGTTTAGCTTTACTGTGACGGTGAGCTCGCCGGCCGAGGGGCGCGA CCGCGATCTCGCCGAGCTTGCCAATCTTCTGGTGGCGCCGATCGACTATCCGACGCCGAAACTGACCTACAGTCATCCAA GCTGCGACGGCCGCGAGGCGACGCGGATCGATGCGGCGCTGGTCGGCACCAGCTTCATCGACCCGGTCAGCGAAGTCCTG ACCGAGCAGGCGTGTCTGACTCGACTCGGTCAATACTTCTATCTCAAGCTCGGCCGCTCCCGCGGTGGGGTGCGACAGGA CAATCTGTCCGAGGCCGAGCTGCGCGAAGTTCGAGACGTCGACGTGATGCTGCTCGAAGAGAACGAAAGCCTGATCGGGC GGCAACAGTACCTCTCGCTGCTGCACCAGATCGTCACGACGCCCTGA
Upstream 100 bases:
>100_bases GGCTCGCCGGCTATGTCGGCCTCGCCGCGCTGGGTACGATCGCGATCGCACGTGCGGTGGCGATCCCGTTTCAGCCCTTC ATCTATTTCCGGTTCTGAGG
Downstream 100 bases:
>100_bases AGCCTGCACAGGTCGAGGCCACGCCTGCGCGGCAGTTCTGCCCTCTTGTTGACTATCGGCCGATCAGTTCCTTCGCGATT TGCCTGACGAAGAACTGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 388; Mature: 387
Protein sequence:
>388_residues MAAITTSPRRWLRRLAAAAFVAMPAWTLWNLAVPSHAVRIGPALVGVTQQVPFDLSLHGFIDGALQKAAVLRIADAMPLR RTLIRLNNQIAYSLFGEITAPGILIGRDGELVQRGYLEEYCSRTIGQADTMADAAIPLLRDIQAYYRDRGKLFLYIVTPS KVADMPDKFTHLIVCPSSPQARAELVPAYVARLRAAGIDVLDLVTSTHAMRSDDTPPFPRGGIHWNELAMARGSQQIVDA INTRAGHELLTPFSFTVTVSSPAEGRDRDLAELANLLVAPIDYPTPKLTYSHPSCDGREATRIDAALVGTSFIDPVSEVL TEQACLTRLGQYFYLKLGRSRGGVRQDNLSEAELREVRDVDVMLLEENESLIGRQQYLSLLHQIVTTP
Sequences:
>Translated_388_residues MAAITTSPRRWLRRLAAAAFVAMPAWTLWNLAVPSHAVRIGPALVGVTQQVPFDLSLHGFIDGALQKAAVLRIADAMPLR RTLIRLNNQIAYSLFGEITAPGILIGRDGELVQRGYLEEYCSRTIGQADTMADAAIPLLRDIQAYYRDRGKLFLYIVTPS KVADMPDKFTHLIVCPSSPQARAELVPAYVARLRAAGIDVLDLVTSTHAMRSDDTPPFPRGGIHWNELAMARGSQQIVDA INTRAGHELLTPFSFTVTVSSPAEGRDRDLAELANLLVAPIDYPTPKLTYSHPSCDGREATRIDAALVGTSFIDPVSEVL TEQACLTRLGQYFYLKLGRSRGGVRQDNLSEAELREVRDVDVMLLEENESLIGRQQYLSLLHQIVTTP >Mature_387_residues AAITTSPRRWLRRLAAAAFVAMPAWTLWNLAVPSHAVRIGPALVGVTQQVPFDLSLHGFIDGALQKAAVLRIADAMPLRR TLIRLNNQIAYSLFGEITAPGILIGRDGELVQRGYLEEYCSRTIGQADTMADAAIPLLRDIQAYYRDRGKLFLYIVTPSK VADMPDKFTHLIVCPSSPQARAELVPAYVARLRAAGIDVLDLVTSTHAMRSDDTPPFPRGGIHWNELAMARGSQQIVDAI NTRAGHELLTPFSFTVTVSSPAEGRDRDLAELANLLVAPIDYPTPKLTYSHPSCDGREATRIDAALVGTSFIDPVSEVLT EQACLTRLGQYFYLKLGRSRGGVRQDNLSEAELREVRDVDVMLLEENESLIGRQQYLSLLHQIVTTP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42741; Mature: 42609
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAITTSPRRWLRRLAAAAFVAMPAWTLWNLAVPSHAVRIGPALVGVTQQVPFDLSLHGF CCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHCHHHHHHHCCCCCCEEHHHH IDGALQKAAVLRIADAMPLRRTLIRLNNQIAYSLFGEITAPGILIGRDGELVQRGYLEEY HHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH CSRTIGQADTMADAAIPLLRDIQAYYRDRGKLFLYIVTPSKVADMPDKFTHLIVCPSSPQ HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHCCCCCCEEEEEECCCCC ARAELVPAYVARLRAAGIDVLDLVTSTHAMRSDDTPPFPRGGIHWNELAMARGSQQIVDA HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHH INTRAGHELLTPFSFTVTVSSPAEGRDRDLAELANLLVAPIDYPTPKLTYSHPSCDGREA HHHCCCCHHCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCCCH TRIDAALVGTSFIDPVSEVLTEQACLTRLGQYFYLKLGRSRGGVRQDNLSEAELREVRDV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHCCC DVMLLEENESLIGRQQYLSLLHQIVTTP EEEEEECCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AAITTSPRRWLRRLAAAAFVAMPAWTLWNLAVPSHAVRIGPALVGVTQQVPFDLSLHGF CCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHCHHHHHHHCCCCCCEEHHHH IDGALQKAAVLRIADAMPLRRTLIRLNNQIAYSLFGEITAPGILIGRDGELVQRGYLEEY HHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH CSRTIGQADTMADAAIPLLRDIQAYYRDRGKLFLYIVTPSKVADMPDKFTHLIVCPSSPQ HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHCCCCCCEEEEEECCCCC ARAELVPAYVARLRAAGIDVLDLVTSTHAMRSDDTPPFPRGGIHWNELAMARGSQQIVDA HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHH INTRAGHELLTPFSFTVTVSSPAEGRDRDLAELANLLVAPIDYPTPKLTYSHPSCDGREA HHHCCCCHHCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCCCH TRIDAALVGTSFIDPVSEVLTEQACLTRLGQYFYLKLGRSRGGVRQDNLSEAELREVRDV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHCCC DVMLLEENESLIGRQQYLSLLHQIVTTP EEEEEECCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA