Definition Rhodopseudomonas palustris TIE-1 chromosome, complete genome.
Accession NC_011004
Length 5,744,041

Click here to switch to the map view.

The map label for this gene is 192288658

Identifier: 192288658

GI number: 192288658

Start: 246494

End: 246895

Strand: Reverse

Name: 192288658

Synonym: Rpal_0227

Alternate gene names: NA

Gene position: 246895-246494 (Counterclockwise)

Preceding gene: 192288659

Following gene: 192288656

Centisome position: 4.3

GC content: 67.91

Gene sequence:

>402_bases
ATGCGCCTGCCGATGGGGACCCCGATGTTCGTGAAATCCACTGCCGCCAGACTGTTGCCGGTCCTGCTCGCGGCAGCCGC
CGTCGCCGTGATCGGCGTCAGCAATGCCGATGCCGCGCCGAAGAAGAAGCGGGTTTACGGCACCTCCGACCAGATCCGCT
ACGGCTCCCGCGGCCCGAACGTGGTCTATCAGGCCGGTCCCCGCACCCGAGTGTACGTTACCAAGCGGTCGTGGCTCGAT
GCCGGCACCGAAGTGCAGCCGGGCGAACGCCACTTCTCGGACTACGCCTTCCCGCCGGGCTATTCGTTCGCCCGCGAGAA
CGGCCAGCGCCCGCTCGACCGTTGGCCGCTCAATCCGGCCTCCGATCTCGGCGGCTCTCCGACCGGTTTCCCGCTGTACT
GA

Upstream 100 bases:

>100_bases
CAACATTTTGGCGACGGGCGGATTGAATGATTGTCGGCTGGTGTTGCCGGATTGATCTTGTGGCCGGTGTGCGGCGGCGG
CTACAAAGGACGAACCTGGA

Downstream 100 bases:

>100_bases
TCCGTTGCGGCACCCGTAGCGACAGCCTCAGAAACGAAAACGCCCGCCGATCCGGCGGGCGTTTTTGTTTGGGTTCAAGG
TCCCCGCCGGGCTGGGCCCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MRLPMGTPMFVKSTAARLLPVLLAAAAVAVIGVSNADAAPKKKRVYGTSDQIRYGSRGPNVVYQAGPRTRVYVTKRSWLD
AGTEVQPGERHFSDYAFPPGYSFARENGQRPLDRWPLNPASDLGGSPTGFPLY

Sequences:

>Translated_133_residues
MRLPMGTPMFVKSTAARLLPVLLAAAAVAVIGVSNADAAPKKKRVYGTSDQIRYGSRGPNVVYQAGPRTRVYVTKRSWLD
AGTEVQPGERHFSDYAFPPGYSFARENGQRPLDRWPLNPASDLGGSPTGFPLY
>Mature_133_residues
MRLPMGTPMFVKSTAARLLPVLLAAAAVAVIGVSNADAAPKKKRVYGTSDQIRYGSRGPNVVYQAGPRTRVYVTKRSWLD
AGTEVQPGERHFSDYAFPPGYSFARENGQRPLDRWPLNPASDLGGSPTGFPLY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14469; Mature: 14469

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLPMGTPMFVKSTAARLLPVLLAAAAVAVIGVSNADAAPKKKRVYGTSDQIRYGSRGPN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCEEECCCCCC
VVYQAGPRTRVYVTKRSWLDAGTEVQPGERHFSDYAFPPGYSFARENGQRPLDRWPLNPA
EEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHCCCCCH
SDLGGSPTGFPLY
HHCCCCCCCCCCC
>Mature Secondary Structure
MRLPMGTPMFVKSTAARLLPVLLAAAAVAVIGVSNADAAPKKKRVYGTSDQIRYGSRGPN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCEEECCCCCC
VVYQAGPRTRVYVTKRSWLDAGTEVQPGERHFSDYAFPPGYSFARENGQRPLDRWPLNPA
EEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHCCCCCH
SDLGGSPTGFPLY
HHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA