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The map label for this gene is sdhC [H]

Identifier: 192288649

GI number: 192288649

Start: 236887

End: 237285

Strand: Reverse

Name: sdhC [H]

Synonym: Rpal_0218

Alternate gene names: 192288649

Gene position: 237285-236887 (Counterclockwise)

Preceding gene: 192288651

Following gene: 192288648

Centisome position: 4.13

GC content: 64.16

Gene sequence:

>399_bases
ATGACCGCCAGGATCGAACGACCGCTTTCGCCTCACATGCAGGCCTACCGCTGGAGCCTGACGATGACGATGTCCATCGT
CCATCGCGCCACCGGCATTGCCCTGTATTCTGGAACCTTGTTGCTGGCGTGGTGGCTGATCGCCTGCGCCGCCGGCCCGA
CCGCCTACGCCAATGTCCAGGCCTTTACCGGCTCATGGATCGGCCGGCTGATCGTCTTCGGCTACACGTGGTCGCTGATG
CACCACATGCTCAGCGGCGTCCGCCACTTCGTCTGGGACCTCGGCTACGGCTTCAAGACCGCCGACCGCGAGTGGCTGAC
CTGGGCGGCGCTGATCGGTGGCATCGTGCTGACCGTTCTGCTCTGGGTGATTGCCTATTCGATGGGGGTGGCCCGATGA

Upstream 100 bases:

>100_bases
CATTTCATCGTTGCGCTCAATCAATGAGCTCCGTAAATAGAGGCACCTTCGCGAGCCTCTCCCCGGGGCCCTGTCCGCTC
GCCGCCAACCGATTGAGCCG

Downstream 100 bases:

>100_bases
GCAGCGACGCCCACGGCAAGCGCACGCCGACCTCGATGCGCACTCCGATCGGCAAGGTGCGCAAATTCGGCCCCGCCGGC
TCCGGAACCTCGGATTTCTG

Product: succinate dehydrogenase, cytochrome b556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MTARIERPLSPHMQAYRWSLTMTMSIVHRATGIALYSGTLLLAWWLIACAAGPTAYANVQAFTGSWIGRLIVFGYTWSLM
HHMLSGVRHFVWDLGYGFKTADREWLTWAALIGGIVLTVLLWVIAYSMGVAR

Sequences:

>Translated_132_residues
MTARIERPLSPHMQAYRWSLTMTMSIVHRATGIALYSGTLLLAWWLIACAAGPTAYANVQAFTGSWIGRLIVFGYTWSLM
HHMLSGVRHFVWDLGYGFKTADREWLTWAALIGGIVLTVLLWVIAYSMGVAR
>Mature_131_residues
TARIERPLSPHMQAYRWSLTMTMSIVHRATGIALYSGTLLLAWWLIACAAGPTAYANVQAFTGSWIGRLIVFGYTWSLMH
HMLSGVRHFVWDLGYGFKTADREWLTWAALIGGIVLTVLLWVIAYSMGVAR

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Homo sapiens, GI4506863, Length=99, Percent_Identity=39.3939393939394, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1786940, Length=101, Percent_Identity=27.7227722772277, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14849; Mature: 14718

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS01000 SDH_CYT_1 ; PS01001 SDH_CYT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTARIERPLSPHMQAYRWSLTMTMSIVHRATGIALYSGTLLLAWWLIACAAGPTAYANVQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AFTGSWIGRLIVFGYTWSLMHHMLSGVRHFVWDLGYGFKTADREWLTWAALIGGIVLTVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
LWVIAYSMGVAR
HHHHHHHHHCCC
>Mature Secondary Structure 
TARIERPLSPHMQAYRWSLTMTMSIVHRATGIALYSGTLLLAWWLIACAAGPTAYANVQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AFTGSWIGRLIVFGYTWSLMHHMLSGVRHFVWDLGYGFKTADREWLTWAALIGGIVLTVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
LWVIAYSMGVAR
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA