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The map label for this gene is atpD [H]

Identifier: 192288604

GI number: 192288604

Start: 185139

End: 186569

Strand: Reverse

Name: atpD [H]

Synonym: Rpal_0171

Alternate gene names: 192288604

Gene position: 186569-185139 (Counterclockwise)

Preceding gene: 192288605

Following gene: 192288603

Centisome position: 3.25

GC content: 64.43

Gene sequence:

>1431_bases
ATGGCTACACCCGCCAATCAGACCGGACGCATCACGCAGGTCATCGGCGCCGTCGTCGACGTTCAGTTCGAAGGGCACCT
GCCGGCCATTCTGAACGCCATCGAAACCAAGAACGGCGACAACCGCTTGGTGCTCGAAGTTGCGCAGCATCTTGGTGAAT
CGACCGTCCGCACCATCGCGATGGACACCACCGAAGGTCTGGTCCGCGGCCAGGAAGTCACCGACACCGGTGCGCCGATC
TCGGTACCGGTCGGCGCCGGCACGCTCGGCCGCATCATGAACGTGATCGGCGAGCCGGTCGACGAGCAGGGCCCGATCAA
GTCGGAAGGCCTCCGCGCCATCCACCAGGAAGCGCCGGCCTACACCGACCAGTCGACCGAGGCTGAAATTCTCGTCACCG
GCATCAAGGTCGTCGATCTGCTGGCGCCTTACGCCAAGGGCGGTAAGATCGGCCTGTTCGGCGGCGCCGGCGTCGGCAAG
ACCGTGCTGATCCAGGAACTGATCAACAACGTCGCCCGCGCTCACGGCGGTTACTCGGTGTTCGCCGGCGTCGGCGAGCG
TACCCGCGAAGGTAACGACCTCTATCACGAGTTCATTGAATCCGGCGTCAACAAGAAGGGCGGCGGCGAGGGTTCGAAGT
GCGCGCTGGTGTACGGCCAGATGAACGAACCGCCGGGCGCTCGCGCTCGCGTCGGTCTGACCGGTCTGACCGTCGCCGAG
CACTTCCGCGATCAGGGCCAGGACGTGCTGTTCTTCGTCGACAACATCTTCCGCTTCACCCAGGCGGGTTCGGAAGTGTC
GGCGCTGCTCGGCCGTATCCCGTCGGCGGTGGGTTATCAGCCGACGCTCGCGACCGACATGGGCGCGCTGCAAGAGCGCA
TCACCACCACCACCAAGGGCTCGATCACCTCGGTGCAGGCGATTTACGTGCCGGCCGACGACTTGACCGACCCGGCGCCC
GCGACCTCGTTCGCGCACTTGGACGCGACCACCGTGCTCAATCGAGCGATCTCTGAAAAGGGCATCTACCCGGCGGTGGA
TCCGCTCGACTCGACCTCGCGCATGCTGTCCGCCTCGATCGTCGGCGAAGAGCACTACAACACCGCGCGTATGGTTCAGC
AGATCCTGCAGAAGTACAAGTCGCTGCAGGACATCATCGCGATCCTGGGCATGGACGAACTGTCCGAAGAGGACAAGCTC
ACCGTGGCTCGCGCCCGTAAGATCGAGCGCTTCCTGTCGCAGCCGTTCTTCGTCGCCGAAGTGTTCACCGGCTCGCCGGG
CAAGTTCGTCGACCTCGCCGACACCATCAAGGGCTTCCGCGCGATCTGCGAAGGCAAGTACGACCATCTGCCGGAAGCGG
CGTTCTACATGGTCGGCACCATCGAAGAGGCGGTCGAGAAGGGTAAGAAGCTCGCCGCCGAGGCGGCCTGA

Upstream 100 bases:

>100_bases
AGATCATCTCGGGCGCCGAGGCGATCTGACGACGTTACACAGGTTTACATCCGGTCGACCGACCGTGGTTTGGATTTCGG
ACTTCAGGGAGACAGTTTAA

Downstream 100 bases:

>100_bases
GCTGAGAGACTACGTCATGGCCGGGCTTGACCCGGCCATCCATCGCCTCAAATCAGTTTCACTGATGGACCCGCGGGTCG
AGCCCGCGGGTGACCGCAGA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 476; Mature: 475

Protein sequence:

>476_residues
MATPANQTGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGAPI
SVPVGAGTLGRIMNVIGEPVDEQGPIKSEGLRAIHQEAPAYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGK
TVLIQELINNVARAHGGYSVFAGVGERTREGNDLYHEFIESGVNKKGGGEGSKCALVYGQMNEPPGARARVGLTGLTVAE
HFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTTKGSITSVQAIYVPADDLTDPAP
ATSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRMLSASIVGEEHYNTARMVQQILQKYKSLQDIIAILGMDELSEEDKL
TVARARKIERFLSQPFFVAEVFTGSPGKFVDLADTIKGFRAICEGKYDHLPEAAFYMVGTIEEAVEKGKKLAAEAA

Sequences:

>Translated_476_residues
MATPANQTGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGAPI
SVPVGAGTLGRIMNVIGEPVDEQGPIKSEGLRAIHQEAPAYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGK
TVLIQELINNVARAHGGYSVFAGVGERTREGNDLYHEFIESGVNKKGGGEGSKCALVYGQMNEPPGARARVGLTGLTVAE
HFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTTKGSITSVQAIYVPADDLTDPAP
ATSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRMLSASIVGEEHYNTARMVQQILQKYKSLQDIIAILGMDELSEEDKL
TVARARKIERFLSQPFFVAEVFTGSPGKFVDLADTIKGFRAICEGKYDHLPEAAFYMVGTIEEAVEKGKKLAAEAA
>Mature_475_residues
ATPANQTGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGAPIS
VPVGAGTLGRIMNVIGEPVDEQGPIKSEGLRAIHQEAPAYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKT
VLIQELINNVARAHGGYSVFAGVGERTREGNDLYHEFIESGVNKKGGGEGSKCALVYGQMNEPPGARARVGLTGLTVAEH
FRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTTKGSITSVQAIYVPADDLTDPAPA
TSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRMLSASIVGEEHYNTARMVQQILQKYKSLQDIIAILGMDELSEEDKLT
VARARKIERFLSQPFFVAEVFTGSPGKFVDLADTIKGFRAICEGKYDHLPEAAFYMVGTIEEAVEKGKKLAAEAA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=469, Percent_Identity=80.5970149253731, Blast_Score=746, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=302, Percent_Identity=28.8079470198675, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI19913426, Length=373, Percent_Identity=25.7372654155496, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI19913428, Length=371, Percent_Identity=26.1455525606469, Blast_Score=99, Evalue=8e-21,
Organism=Homo sapiens, GI50345984, Length=301, Percent_Identity=26.9102990033223, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI4757810, Length=301, Percent_Identity=26.9102990033223, Blast_Score=97, Evalue=4e-20,
Organism=Escherichia coli, GI1790170, Length=465, Percent_Identity=70.1075268817204, Blast_Score=661, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=362, Percent_Identity=30.939226519337, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1790172, Length=325, Percent_Identity=26.7692307692308, Blast_Score=109, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI25144756, Length=474, Percent_Identity=75.9493670886076, Blast_Score=723, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=302, Percent_Identity=30.1324503311258, Blast_Score=123, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17510931, Length=357, Percent_Identity=25.2100840336134, Blast_Score=108, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI17570191, Length=357, Percent_Identity=25.4901960784314, Blast_Score=106, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI71988080, Length=324, Percent_Identity=25.3086419753086, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71988063, Length=324, Percent_Identity=25.3086419753086, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71988074, Length=315, Percent_Identity=23.8095238095238, Blast_Score=78, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6322581, Length=460, Percent_Identity=76.7391304347826, Blast_Score=713, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=366, Percent_Identity=26.2295081967213, Blast_Score=108, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6319370, Length=371, Percent_Identity=26.6846361185984, Blast_Score=103, Evalue=8e-23,
Organism=Saccharomyces cerevisiae, GI6320016, Length=254, Percent_Identity=27.1653543307087, Blast_Score=85, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24638766, Length=470, Percent_Identity=79.7872340425532, Blast_Score=743, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=469, Percent_Identity=69.0831556503198, Blast_Score=655, Evalue=0.0,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=73.6263736263736, Blast_Score=133, Evalue=3e-31,
Organism=Drosophila melanogaster, GI20129479, Length=312, Percent_Identity=27.8846153846154, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24583988, Length=332, Percent_Identity=27.4096385542169, Blast_Score=121, Evalue=8e-28,
Organism=Drosophila melanogaster, GI24583986, Length=332, Percent_Identity=27.4096385542169, Blast_Score=121, Evalue=8e-28,
Organism=Drosophila melanogaster, GI24583984, Length=332, Percent_Identity=27.4096385542169, Blast_Score=121, Evalue=8e-28,
Organism=Drosophila melanogaster, GI24583992, Length=302, Percent_Identity=28.476821192053, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI281361666, Length=363, Percent_Identity=25.8953168044077, Blast_Score=105, Evalue=7e-23,
Organism=Drosophila melanogaster, GI24646341, Length=363, Percent_Identity=25.8953168044077, Blast_Score=105, Evalue=7e-23,
Organism=Drosophila melanogaster, GI17136796, Length=363, Percent_Identity=25.8953168044077, Blast_Score=105, Evalue=7e-23,
Organism=Drosophila melanogaster, GI24658560, Length=324, Percent_Identity=25, Blast_Score=91, Evalue=2e-18,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50717; Mature: 50586

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATPANQTGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIA
CCCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHEE
MDTTEGLVRGQEVTDTGAPISVPVGAGTLGRIMNVIGEPVDEQGPIKSEGLRAIHQEAPA
ECCHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC
YTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVARAHGGYSV
CCCCCCCCEEEEHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEE
FAGVGERTREGNDLYHEFIESGVNKKGGGEGSKCALVYGQMNEPPGARARVGLTGLTVAE
EECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCEEECCHHHHHHH
HFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTTKG
HHHHCCCEEEEHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCC
SITSVQAIYVPADDLTDPAPATSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRMLSASI
CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
VGEEHYNTARMVQQILQKYKSLQDIIAILGMDELSEEDKLTVARARKIERFLSQPFFVAE
HCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCEEEEE
VFTGSPGKFVDLADTIKGFRAICEGKYDHLPEAAFYMVGTIEEAVEKGKKLAAEAA
EEECCCCCEEHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATPANQTGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIA
CCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHEE
MDTTEGLVRGQEVTDTGAPISVPVGAGTLGRIMNVIGEPVDEQGPIKSEGLRAIHQEAPA
ECCHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC
YTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVARAHGGYSV
CCCCCCCCEEEEHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEE
FAGVGERTREGNDLYHEFIESGVNKKGGGEGSKCALVYGQMNEPPGARARVGLTGLTVAE
EECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCEEECCHHHHHHH
HFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTTKG
HHHHCCCEEEEHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCC
SITSVQAIYVPADDLTDPAPATSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRMLSASI
CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
VGEEHYNTARMVQQILQKYKSLQDIIAILGMDELSEEDKLTVARARKIERFLSQPFFVAE
HCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCEEEEE
VFTGSPGKFVDLADTIKGFRAICEGKYDHLPEAAFYMVGTIEEAVEKGKKLAAEAA
EEECCCCCEEHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA