Definition Rhodopseudomonas palustris TIE-1 chromosome, complete genome.
Accession NC_011004
Length 5,744,041

Click here to switch to the map view.

The map label for this gene is 192288526

Identifier: 192288526

GI number: 192288526

Start: 102281

End: 102622

Strand: Reverse

Name: 192288526

Synonym: Rpal_0093

Alternate gene names: NA

Gene position: 102622-102281 (Counterclockwise)

Preceding gene: 192288527

Following gene: 192288525

Centisome position: 1.79

GC content: 59.36

Gene sequence:

>342_bases
ATGGCAGACAAGAACTCGTCCGACGTCATCCTGAACGTGATGACCAAGAACCTCGAGCAGGCGCGCGGCGCGATGACCAA
CTACCTCGAGTTCATCAGCAAGAGCATGTCGGTGGTGCCGATGGGCCAGAGCAGCCAGGCCACGACGCTGAAGGGTTACG
TCGACCGCAACGTCCAGGCGACCTTCGATTTCTCGCAGCAGTTGCTGCATGCCAAGGACTTTCAGGACGTGGTTCGGATC
CAGACCGAATTCCTGCAGACGCAATTCCGTGTGCTCACCGACCAGGCCAAGGACGTCGTCGAGATGACCAAGCCGACCGT
CATCGTTCCGAACGACGGCTAG

Upstream 100 bases:

>100_bases
CAGATTTTGCGATCATTGTCGCGCGTGAATGGCGTGTACAGGGCTCCGGCCGTGCGGCCATCTGATGCTTAGGTAGCCGG
AGAGCCTCGAGGAGATCGCG

Downstream 100 bases:

>100_bases
AAGGTTTTGTCCGCCACCGCCGGTCTGCCAGCGGCGTAGCGGTCGTCACATGACCGCTACGGGAACGGTTGCGCACACAT
CGCATTGATGCAGCTGAACA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MADKNSSDVILNVMTKNLEQARGAMTNYLEFISKSMSVVPMGQSSQATTLKGYVDRNVQATFDFSQQLLHAKDFQDVVRI
QTEFLQTQFRVLTDQAKDVVEMTKPTVIVPNDG

Sequences:

>Translated_113_residues
MADKNSSDVILNVMTKNLEQARGAMTNYLEFISKSMSVVPMGQSSQATTLKGYVDRNVQATFDFSQQLLHAKDFQDVVRI
QTEFLQTQFRVLTDQAKDVVEMTKPTVIVPNDG
>Mature_112_residues
ADKNSSDVILNVMTKNLEQARGAMTNYLEFISKSMSVVPMGQSSQATTLKGYVDRNVQATFDFSQQLLHAKDFQDVVRIQ
TEFLQTQFRVLTDQAKDVVEMTKPTVIVPNDG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12692; Mature: 12560

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADKNSSDVILNVMTKNLEQARGAMTNYLEFISKSMSVVPMGQSSQATTLKGYVDRNVQA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCCCEE
TFDFSQQLLHAKDFQDVVRIQTEFLQTQFRVLTDQAKDVVEMTKPTVIVPNDG
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
>Mature Secondary Structure 
ADKNSSDVILNVMTKNLEQARGAMTNYLEFISKSMSVVPMGQSSQATTLKGYVDRNVQA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCCCEE
TFDFSQQLLHAKDFQDVVRIQTEFLQTQFRVLTDQAKDVVEMTKPTVIVPNDG
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA