| Definition | Rhizobium etli CIAT 652 plasmid pC, complete sequence. |
|---|---|
| Accession | NC_010997 |
| Length | 1,091,523 |
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The map label for this gene is 190895285
Identifier: 190895285
GI number: 190895285
Start: 1053461
End: 1055767
Strand: Reverse
Name: 190895285
Synonym: RHECIAT_PC0000958
Alternate gene names: NA
Gene position: 1055767-1053461 (Counterclockwise)
Preceding gene: 190895286
Following gene: 190895284
Centisome position: 96.72
GC content: 59.56
Gene sequence:
>2307_bases ATGGCTGATGATCGCAAGACAACCGTCCAGACGCCGCTTGGATCCGAAGCGCTGACCTTCACGCATCTCATCGGTCGCGA TGAGGTCAGCCGGTGTTTTGCCTTCACCGTCGGCTTCATCAGTTCCGATGAGAATGTCGACGCACTGAAGCTGCTCGGAA AACCCCTGTCGATAGAAGGAGAAAGCGGAGACAAGAAACGCTGGTTCAGCGGGCTCGTCACCGATTTTCGCCTGACGCGC ATCGAGGAGAGGTTTGCCTACTACGAGGCGGAGGTGCGACCCTGGCTTTGGCTGCTCGGCAACAGCACCGATTGCCGTAT CTTCCAGAATATGAGCGTCGTCGAAATCGTCGAGAAGATCTTCTCGAAATACAAGGCGGCAAAATACGAAAAGCGGTTGC AGGGTACCTACGAAGCGCGGGAATACTGCGTGCAATATGACGAGACCGACCTTGACTTCGTGCAGAGGCTGCTCGAGCAC GAAGGCATCATGTATTTCTTCGAGTATGGCGAGGGCGAACACACCCTCGTCCTGGCCGACGCCATGAACAAGCTGAAGCC GGTGCCAGGCTATAGCAGCGTCAAGTTCCGGGCCGAGGGCGATCCCGTGCGTCGGGATGAGGAATACATGACGGACTGGG TTTCGACCAGTTCCGTCCAGCCCGGCACTTTTGCCCACACGGACTACGACTTCACCAAGCCGGGCGCCGACCTCATGGCG CAATCGGCGCAACCGTTCTCTCACGCAGAGGCCCAGGGAGAGCATTATCGCCATCCGGGCGCGCATCTGACGGTCGGCCG GGGCGATGCGGTTGCCGTCGTGCGGCGGGAGGAAATTCAGGCGGCACATCAACGGATCGCCGCTGCCGGCACGGTGCGGG GTCTGGCTTCCGGTTGCACTTTCAAACTCGAGAATTTCCCGCGCAAGGACCAGAACGCGGAATACGTTGTGCTGCACGCC GACTATCGCCTCTTCGATCCGGGGTACCGACCTGCCGCCTATGCAGGGGAAGAAACCTTTCGAGCCACATTCCAGGTCGC TCCAACCTCCATCACTTATCGGCCGCCTCGCAACACGATAAGGCCGGTCATGCGCGGGCCCCAGACCGCGACCGTGGTCG GTCCCGCGGGCGAGGAAATTTTCACCGACAAATATGCCCGCGTGAAAGTGCAGTTCCACTGGGATCGCCTCGGCAAGAAG GATCAGAACAGCTCCTGTTTTGTGCGCGTGTCGCAGACCTGGAGCGGCGCTGGCTGGGGCTTCATTCAGATTCCGCGGAT CGGCCAGGAAGTGATTGTCGACTTTCTCGAAGGGGATCCTGATCGACCCATCATCACCGGCAGGGTCTATAACGGCAAGG AGATGCCGCCCTACGAGTTGCCGGGAAACGCCACGCAATCCGGATTGAAGACGAATTCGTCGCCGGGAGGCGGTGGCTGG AACGAATTGCGTTTCGAAGACAAAGCCGGTTCGGAGGAGGTCTATTTCCAGGCGCAGAAGGACCACAACCTCCTGGTCAA ACACGATCGCAGCAAGCTCGTCCAACACGACCAGTCGGATCGCATCGACAACAACGCCAAGCACTCAGTCGGCGTGAACC TCGACGAGGATGTCGGCAATAACAAGACGACCAAGGTGGGTGTCGACCGCACCGTCAATATCGGATCGAACGACACCGAG ACGGTGGGATCCAATCGCTCTCTTACAGTCGGTTCCAACGAGACGATCAGTATCGGCTCAAACTCGACGGAAACCATCGG TGCCAGTCATACCCAGACCGTCGCAATCGTCCAGACGGTGACGGTTGGCGCGGCACGCGTCGATACCGTCGGCGGGCCGG AGACACGATCGGTCGGCGCGACGCAATCAAACACGATCGGCGCGTCCCGTTCTGTCAGCGTCGGTGCCGGCCAGAGCCAC GAAGTGGGCTCCTCGGACAGCTGGAATATCGGTTCCGACCAGAGCGTGTCGATCGCCGGTGGGCAGACGAGCAGCATCGG CAAGGCGCGTAGCGCCAAGATCGGCGATGACGATTCGACGGAGATCGGCGCAAGCAGGGCGGTGAAAGTCGCCAAGGGCA GTCTTGTCGAGGTGGGCGAAGACGGAGCGATCAAGATCGGTCAGGACCTGCTGATCGAAGCGGGGGACTCGGTCGTCATC AAGTGCGGGTCGGCAAGCATCGCGATGAAGAAGGACGGCACGATCTCGATCGAAGGCAAGGACATTTCGATCAACGCCTC GGGTAAATTCAATGGCAAGGCCTCGGGAGAGGTCACATGGAAGGGCAGCAAGATCAATCATAATTGA
Upstream 100 bases:
>100_bases CGGATTGCTGCAGTGTCGATGTCCCTTCCGGGGCGACGGGCCTTTGTGCTAGGCTTCTTCATCGGGATCGCCGGCGTCAC GGGACAGGGGCATTCTCCGC
Downstream 100 bases:
>100_bases GGATGGGTCATATGTCCGACATTCTGGAGCGGATTGAGGGAGTAGTCATCGGGCTGTTGCTGGGTTTCGATGCAGGCGTG CCATTGGTCGTGTTTCCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: Type VI Secretion System Vgr Family Protein; VgrG Protein; Rhs-Family Protein; Rhs Family Protein; Rhs Element Vgr Family Protein; Rhs Accessory Genetic Element; Vgr-Related Protein; RHS Accessory Genetic Element; VgrG Family T6SS G; Conserved Hypothethical Protein; Rhs Element Vgr Family; Rhs Element Vgr ProteinGp5-Like; Type VI Secretion System VgrG Family Protein; Rhs Element Vgr Protein Subfamily; Rhs Element Protein; Type VI Secretion System Effector Protein VgrS; VrgG Protein; Fimbrial Operon Related Protein; Vgr Protein; Vgr Family Type VI Secretion System
Number of amino acids: Translated: 768; Mature: 767
Protein sequence:
>768_residues MADDRKTTVQTPLGSEALTFTHLIGRDEVSRCFAFTVGFISSDENVDALKLLGKPLSIEGESGDKKRWFSGLVTDFRLTR IEERFAYYEAEVRPWLWLLGNSTDCRIFQNMSVVEIVEKIFSKYKAAKYEKRLQGTYEAREYCVQYDETDLDFVQRLLEH EGIMYFFEYGEGEHTLVLADAMNKLKPVPGYSSVKFRAEGDPVRRDEEYMTDWVSTSSVQPGTFAHTDYDFTKPGADLMA QSAQPFSHAEAQGEHYRHPGAHLTVGRGDAVAVVRREEIQAAHQRIAAAGTVRGLASGCTFKLENFPRKDQNAEYVVLHA DYRLFDPGYRPAAYAGEETFRATFQVAPTSITYRPPRNTIRPVMRGPQTATVVGPAGEEIFTDKYARVKVQFHWDRLGKK DQNSSCFVRVSQTWSGAGWGFIQIPRIGQEVIVDFLEGDPDRPIITGRVYNGKEMPPYELPGNATQSGLKTNSSPGGGGW NELRFEDKAGSEEVYFQAQKDHNLLVKHDRSKLVQHDQSDRIDNNAKHSVGVNLDEDVGNNKTTKVGVDRTVNIGSNDTE TVGSNRSLTVGSNETISIGSNSTETIGASHTQTVAIVQTVTVGAARVDTVGGPETRSVGATQSNTIGASRSVSVGAGQSH EVGSSDSWNIGSDQSVSIAGGQTSSIGKARSAKIGDDDSTEIGASRAVKVAKGSLVEVGEDGAIKIGQDLLIEAGDSVVI KCGSASIAMKKDGTISIEGKDISINASGKFNGKASGEVTWKGSKINHN
Sequences:
>Translated_768_residues MADDRKTTVQTPLGSEALTFTHLIGRDEVSRCFAFTVGFISSDENVDALKLLGKPLSIEGESGDKKRWFSGLVTDFRLTR IEERFAYYEAEVRPWLWLLGNSTDCRIFQNMSVVEIVEKIFSKYKAAKYEKRLQGTYEAREYCVQYDETDLDFVQRLLEH EGIMYFFEYGEGEHTLVLADAMNKLKPVPGYSSVKFRAEGDPVRRDEEYMTDWVSTSSVQPGTFAHTDYDFTKPGADLMA QSAQPFSHAEAQGEHYRHPGAHLTVGRGDAVAVVRREEIQAAHQRIAAAGTVRGLASGCTFKLENFPRKDQNAEYVVLHA DYRLFDPGYRPAAYAGEETFRATFQVAPTSITYRPPRNTIRPVMRGPQTATVVGPAGEEIFTDKYARVKVQFHWDRLGKK DQNSSCFVRVSQTWSGAGWGFIQIPRIGQEVIVDFLEGDPDRPIITGRVYNGKEMPPYELPGNATQSGLKTNSSPGGGGW NELRFEDKAGSEEVYFQAQKDHNLLVKHDRSKLVQHDQSDRIDNNAKHSVGVNLDEDVGNNKTTKVGVDRTVNIGSNDTE TVGSNRSLTVGSNETISIGSNSTETIGASHTQTVAIVQTVTVGAARVDTVGGPETRSVGATQSNTIGASRSVSVGAGQSH EVGSSDSWNIGSDQSVSIAGGQTSSIGKARSAKIGDDDSTEIGASRAVKVAKGSLVEVGEDGAIKIGQDLLIEAGDSVVI KCGSASIAMKKDGTISIEGKDISINASGKFNGKASGEVTWKGSKINHN >Mature_767_residues ADDRKTTVQTPLGSEALTFTHLIGRDEVSRCFAFTVGFISSDENVDALKLLGKPLSIEGESGDKKRWFSGLVTDFRLTRI EERFAYYEAEVRPWLWLLGNSTDCRIFQNMSVVEIVEKIFSKYKAAKYEKRLQGTYEAREYCVQYDETDLDFVQRLLEHE GIMYFFEYGEGEHTLVLADAMNKLKPVPGYSSVKFRAEGDPVRRDEEYMTDWVSTSSVQPGTFAHTDYDFTKPGADLMAQ SAQPFSHAEAQGEHYRHPGAHLTVGRGDAVAVVRREEIQAAHQRIAAAGTVRGLASGCTFKLENFPRKDQNAEYVVLHAD YRLFDPGYRPAAYAGEETFRATFQVAPTSITYRPPRNTIRPVMRGPQTATVVGPAGEEIFTDKYARVKVQFHWDRLGKKD QNSSCFVRVSQTWSGAGWGFIQIPRIGQEVIVDFLEGDPDRPIITGRVYNGKEMPPYELPGNATQSGLKTNSSPGGGGWN ELRFEDKAGSEEVYFQAQKDHNLLVKHDRSKLVQHDQSDRIDNNAKHSVGVNLDEDVGNNKTTKVGVDRTVNIGSNDTET VGSNRSLTVGSNETISIGSNSTETIGASHTQTVAIVQTVTVGAARVDTVGGPETRSVGATQSNTIGASRSVSVGAGQSHE VGSSDSWNIGSDQSVSIAGGQTSSIGKARSAKIGDDDSTEIGASRAVKVAKGSLVEVGEDGAIKIGQDLLIEAGDSVVIK CGSASIAMKKDGTISIEGKDISINASGKFNGKASGEVTWKGSKINHN
Specific function: Unknown
COG id: COG3501
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 83749; Mature: 83618
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADDRKTTVQTPLGSEALTFTHLIGRDEVSRCFAFTVGFISSDENVDALKLLGKPLSIEG CCCCCCCEEECCCCCCCEEEHHHHCHHHHHHHEEEEEEEECCCCCCHHHHHCCCCCEEEC ESGDKKRWFSGLVTDFRLTRIEERFAYYEAEVRPWLWLLGNSTDCRIFQNMSVVEIVEKI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCHHHHHHHH FSKYKAAKYEKRLQGTYEAREYCVQYDETDLDFVQRLLEHEGIMYFFEYGEGEHTLVLAD HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEECCCCEEEEEEE AMNKLKPVPGYSSVKFRAEGDPVRRDEEYMTDWVSTSSVQPGTFAHTDYDFTKPGADLMA HHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHH QSAQPFSHAEAQGEHYRHPGAHLTVGRGDAVAVVRREEIQAAHQRIAAAGTVRGLASGCT CCCCCCHHHHCCCCCCCCCCCEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCE FKLENFPRKDQNAEYVVLHADYRLFDPGYRPAAYAGEETFRATFQVAPTSITYRPPRNTI EEECCCCCCCCCCCEEEEEECEEEECCCCCCCCCCCCCCEEEEEEECCCEEEECCCCHHH RPVMRGPQTATVVGPAGEEIFTDKYARVKVQFHWDRLGKKDQNSSCFVRVSQTWSGAGWG HHHHCCCCEEEEECCCCCHHHCCCEEEEEEEEEHHHCCCCCCCCCEEEEEECCCCCCCCC FIQIPRIGQEVIVDFLEGDPDRPIITGRVYNGKEMPPYELPGNATQSGLKTNSSPGGGGW EEECCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC NELRFEDKAGSEEVYFQAQKDHNLLVKHDRSKLVQHDQSDRIDNNAKHSVGVNLDEDVGN CCEEECCCCCCCEEEEEECCCCCEEEEECHHHHHCCCCCCCCCCCCCCEECCCCHHCCCC NKTTKVGVDRTVNIGSNDTETVGSNRSLTVGSNETISIGSNSTETIGASHTQTVAIVQTV CCCEEEECCEEEECCCCCCHHCCCCCEEEECCCCEEEECCCCCCCCCCCCCEEEEEEEEE TVGAARVDTVGGPETRSVGATQSNTIGASRSVSVGAGQSHEVGSSDSWNIGSDQSVSIAG EECCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEC GQTSSIGKARSAKIGDDDSTEIGASRAVKVAKGSLVEVGEDGAIKIGQDLLIEAGDSVVI CCCCCCCCCCCCCCCCCCCCCCCHHHEEEEECCCEEEECCCCCEEECCEEEEECCCEEEE KCGSASIAMKKDGTISIEGKDISINASGKFNGKASGEVTWKGSKINHN EECCCEEEEECCCEEEEECCEEEEECCCCCCCCCCCEEEEECCCCCCC >Mature Secondary Structure ADDRKTTVQTPLGSEALTFTHLIGRDEVSRCFAFTVGFISSDENVDALKLLGKPLSIEG CCCCCCEEECCCCCCCEEEHHHHCHHHHHHHEEEEEEEECCCCCCHHHHHCCCCCEEEC ESGDKKRWFSGLVTDFRLTRIEERFAYYEAEVRPWLWLLGNSTDCRIFQNMSVVEIVEKI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCHHHHHHHH FSKYKAAKYEKRLQGTYEAREYCVQYDETDLDFVQRLLEHEGIMYFFEYGEGEHTLVLAD HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEECCCCEEEEEEE AMNKLKPVPGYSSVKFRAEGDPVRRDEEYMTDWVSTSSVQPGTFAHTDYDFTKPGADLMA HHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHH QSAQPFSHAEAQGEHYRHPGAHLTVGRGDAVAVVRREEIQAAHQRIAAAGTVRGLASGCT CCCCCCHHHHCCCCCCCCCCCEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCE FKLENFPRKDQNAEYVVLHADYRLFDPGYRPAAYAGEETFRATFQVAPTSITYRPPRNTI EEECCCCCCCCCCCEEEEEECEEEECCCCCCCCCCCCCCEEEEEEECCCEEEECCCCHHH RPVMRGPQTATVVGPAGEEIFTDKYARVKVQFHWDRLGKKDQNSSCFVRVSQTWSGAGWG HHHHCCCCEEEEECCCCCHHHCCCEEEEEEEEEHHHCCCCCCCCCEEEEEECCCCCCCCC FIQIPRIGQEVIVDFLEGDPDRPIITGRVYNGKEMPPYELPGNATQSGLKTNSSPGGGGW EEECCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC NELRFEDKAGSEEVYFQAQKDHNLLVKHDRSKLVQHDQSDRIDNNAKHSVGVNLDEDVGN CCEEECCCCCCCEEEEEECCCCCEEEEECHHHHHCCCCCCCCCCCCCCEECCCCHHCCCC NKTTKVGVDRTVNIGSNDTETVGSNRSLTVGSNETISIGSNSTETIGASHTQTVAIVQTV CCCEEEECCEEEECCCCCCHHCCCCCEEEECCCCEEEECCCCCCCCCCCCCEEEEEEEEE TVGAARVDTVGGPETRSVGATQSNTIGASRSVSVGAGQSHEVGSSDSWNIGSDQSVSIAG EECCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEC GQTSSIGKARSAKIGDDDSTEIGASRAVKVAKGSLVEVGEDGAIKIGQDLLIEAGDSVVI CCCCCCCCCCCCCCCCCCCCCCCHHHEEEEECCCEEEECCCCCEEECCEEEEECCCEEEE KCGSASIAMKKDGTISIEGKDISINASGKFNGKASGEVTWKGSKINHN EECCCEEEEECCCEEEEECCEEEEECCCCCCCCCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA