| Definition | Rhizobium etli CIAT 652 plasmid pC, complete sequence. |
|---|---|
| Accession | NC_010997 |
| Length | 1,091,523 |
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The map label for this gene is clpV1 [H]
Identifier: 190895264
GI number: 190895264
Start: 1027753
End: 1030485
Strand: Reverse
Name: clpV1 [H]
Synonym: RHECIAT_PC0000937
Alternate gene names: 190895264
Gene position: 1030485-1027753 (Counterclockwise)
Preceding gene: 190895283
Following gene: 190895262
Centisome position: 94.41
GC content: 59.93
Gene sequence:
>2733_bases ATGCAGCAGAACGTGTCTTCTCACAGCTTCAAACGTAAGGAACTCGTCGGCAAGCTCGATCCAATCTGTCTGCGTGCATT CAGGGCGGCAGCCGACGCCGCCAAGCTTCGCGGCAATCCCTATGTCGAACTCGTGCATTGGATCGAGCAACTGGCGCTGG TCGACCGAGCGGATTTCCAGCTGATCCTCGCCGATGCCGGCGTGGATCTCGGCCGCCTTGCAGCCGACATGGCGCGGTCG ATCGACAAGCTGCCCTATGGCGCGACGTCTATTGAAGAGTTCTCAGACCACATATTCCACGCTGTCCAGGAGGCCTGGAG TCTCGGAAGTCTTCAATTCGGCTCGGAAGAGGTGCGCGGCGCTTACGTCCTTCTGGCCTGTAGAAAGGTGCCGGTGCTTG ATGGCTTGCTGTTGAAGATCAGCAGTGAGTTCGACCGGATCGAAGCCGATTCCGTCCTTGCTCGCCTCGACGACGTACTC TCGCAATCGCTTGAGAATAGAGGCCGGCGCGAAGCTGGACAACCGGTGCGAAAGGAACGACCGGCTGGCGGCGAGTCCGC TTTGGCCAAATATGCGACTGATCTGACGAGCCGTGCTCGAGAAGGAAAGATCGATCCGGTTGTCGGTCGCGATCCGGAAA TTCGCCAGATTGTCGATATCCTCATGCGCCGACGGCAGAACAACCCGATCCTGACGGGCGAGGCCGGGGTCGGCAAGACC GCGGTCGTTGAAGGCTTTGCGCTTCGCCTTGTTGCAGAGGACGTGCCGCCGCCACTCAAAGGGGTCGCGCTCCACATGCT GGATGTTGGCCTGATGCAGGCCGGAGCGAGCGTCAAAGGCGAGTTCGAAAAGCGCCTCAAGATGGTGATTGACGAGGTGC AGTCATCGGAAACGCCGATCATCCTCTTCATCGACGAAGCGCATACGCTGATCGGAGCGGGTGGGGCTGCTGGAACGGGA GACGCCGCAAATCTTTTGAAGCCAGCATTGGCGCGCGGCGAGCTTCGCACAATCGCCGCCACGACATGGGCGGAGTATAA ACAGCACATCGAAAAAGATCCGGCGCTGACTCGGCGCTTCCAAGTGGTCAAGATCGAGGAACCCAGCGAAGAAAGCGCCG TTCTCATGCTGCGTGGCGTGGCGGGCACGCTCGAGAAACATCATCAGGTTCAGATCCTCGACGAGGCGATCGAAACGGCG GTCAGCCTTTCACATCGTTACATTCCGGCCCGCCAGTTGCCCGACAAGGCAGTCAGCTTGCTCGATACCGCTTGCGCGCG CGTGGCGGTATCTCAGCACGCAACGCCGGCCGAGGTTGAAGATCTTCTGCGACGCAAGCAGGCTCTCGAGATCGAGCAGG GGATTATCGGCCGCGAAAGGTCGATCGGCATCGAGGTTGCGGAGCGTCAAGCTCGCGTCGACAACGCCCTTGGCGAGGTG GAGACGACCCTAGCGGAGGCGCAAGCCCGCTGGGAAAAGGAACGTTCGCTGGTGTCTGATATTCTCGACCTGCGGGCCAG GCTGCGCAGCGAGGGAGTTCCTCTCGATGCGGCGTTGTCGCAACAGGGCGCTACCGCGCCCAATCCGACGGTCGCCGACG AAAATTCCTCAGCGACCCGGGAAGGCGAAAAAGAAGCTCCCGATGGAAATGCCGACCTTGCGCGCCTTAAGGCGATAACG CAGGAACTCGCCGAAATGCAGGGCGAAACGCCATTGATGCTGCTGTCGGTAGACCGCAATGCTGTCGCCTCGGTGGTAAA GGATTGGACCGGTATCCCCGTCGGGCGAATGCTCGCCGGCCAGACGGAAAGAGCGCTCAAGCTCGCCGGAATTCTCGGCG AACGCGTTGTCGGCCAGGACCTTGCCATGGAAGCGATCGCACGCCGCGTCCGGACCAGCCGCGCGGGACTGGGGTCGCCG GAAAAGCCGGTCGGCGTTTTCCTGCTTTGTGGACCGTCCGGTGTCGGCAAGACGGAAACGGCGCTTGCCCTTGCCGAAGC ATTATACGGCGGCGAACAGAACCTGATCTCCATCAACATGTCGGAATTTCAGGAAGCCCATACGGTTTCGACGCTGAAGG GAGCACCCCCCGGCTATGTCGGTTATGGCAAGGGAGGTATTCTGACCGAGGCCGTGCGCCGCAGGCCCTATTCCGTCATA TTGCTCGACGAGGTCGAAAAAGCGCATCCCGATGTCCACGAGATTTTCTTTCAGGTCTTCGACAAGGGAATGATGGACGA CAGTGAGGGTCGACGGATTGATTTTAGGAATACACTTATTTTGCTGACCTCCAATGTCGGTTCGGATGTCATCATGAGGC TGACCGGCAACGGGGTCTCCCGCACGCCGACCGAAGAACTCGAAGCTGCATTGCGCACACCGTTGCTGCAGGTGTTCCCC GCCGCCTTCCTCGGGCGCGTCATCGTTGTGCCCTATTATCCTCTCTCGGATTCCATGATCGAAGCAATCGCTCAGGCAAA TTTTGCGAAGATCGCGCAGCGGCTGCGTAGGAGCCATAACGCCGAACTGATCATAGGCGAGGGCGTTATCGACTTGGTCA AGGCGCGCTGCACTGAAGTGGAGTCGGGCGGTCGCATGATCGATGCGATCTTGACCAACACGCTTCTGCCGGCCCTCAGC ACCGGCATATTGAACTGGGCGCTGGATGGCAGACGCCTGACGAAGGCGACGGTCGGAGCATCTGCGGAAGGCTTCACCTA CGCTTTTGAATAG
Upstream 100 bases:
>100_bases GTTCGAATATTTGTCAAGAACACTATAATATGGCAGTTTGCCATTGAGATTGAAGACTAGGCTCGTTCATTCACGAGCAC CTGGCAGGAGCCCGACCGGC
Downstream 100 bases:
>100_bases CGCTTAGATGGCATTTGTGCCTGCTGTCTGCCTTTAGCTGACGGCCTGGAATTCGACACGTCGGTTCTCGTCAGCTTTCG GCTTTTGTGGATCGAGCGGA
Product: putative ATP-dependent Clp protease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 910; Mature: 910
Protein sequence:
>910_residues MQQNVSSHSFKRKELVGKLDPICLRAFRAAADAAKLRGNPYVELVHWIEQLALVDRADFQLILADAGVDLGRLAADMARS IDKLPYGATSIEEFSDHIFHAVQEAWSLGSLQFGSEEVRGAYVLLACRKVPVLDGLLLKISSEFDRIEADSVLARLDDVL SQSLENRGRREAGQPVRKERPAGGESALAKYATDLTSRAREGKIDPVVGRDPEIRQIVDILMRRRQNNPILTGEAGVGKT AVVEGFALRLVAEDVPPPLKGVALHMLDVGLMQAGASVKGEFEKRLKMVIDEVQSSETPIILFIDEAHTLIGAGGAAGTG DAANLLKPALARGELRTIAATTWAEYKQHIEKDPALTRRFQVVKIEEPSEESAVLMLRGVAGTLEKHHQVQILDEAIETA VSLSHRYIPARQLPDKAVSLLDTACARVAVSQHATPAEVEDLLRRKQALEIEQGIIGRERSIGIEVAERQARVDNALGEV ETTLAEAQARWEKERSLVSDILDLRARLRSEGVPLDAALSQQGATAPNPTVADENSSATREGEKEAPDGNADLARLKAIT QELAEMQGETPLMLLSVDRNAVASVVKDWTGIPVGRMLAGQTERALKLAGILGERVVGQDLAMEAIARRVRTSRAGLGSP EKPVGVFLLCGPSGVGKTETALALAEALYGGEQNLISINMSEFQEAHTVSTLKGAPPGYVGYGKGGILTEAVRRRPYSVI LLDEVEKAHPDVHEIFFQVFDKGMMDDSEGRRIDFRNTLILLTSNVGSDVIMRLTGNGVSRTPTEELEAALRTPLLQVFP AAFLGRVIVVPYYPLSDSMIEAIAQANFAKIAQRLRRSHNAELIIGEGVIDLVKARCTEVESGGRMIDAILTNTLLPALS TGILNWALDGRRLTKATVGASAEGFTYAFE
Sequences:
>Translated_910_residues MQQNVSSHSFKRKELVGKLDPICLRAFRAAADAAKLRGNPYVELVHWIEQLALVDRADFQLILADAGVDLGRLAADMARS IDKLPYGATSIEEFSDHIFHAVQEAWSLGSLQFGSEEVRGAYVLLACRKVPVLDGLLLKISSEFDRIEADSVLARLDDVL SQSLENRGRREAGQPVRKERPAGGESALAKYATDLTSRAREGKIDPVVGRDPEIRQIVDILMRRRQNNPILTGEAGVGKT AVVEGFALRLVAEDVPPPLKGVALHMLDVGLMQAGASVKGEFEKRLKMVIDEVQSSETPIILFIDEAHTLIGAGGAAGTG DAANLLKPALARGELRTIAATTWAEYKQHIEKDPALTRRFQVVKIEEPSEESAVLMLRGVAGTLEKHHQVQILDEAIETA VSLSHRYIPARQLPDKAVSLLDTACARVAVSQHATPAEVEDLLRRKQALEIEQGIIGRERSIGIEVAERQARVDNALGEV ETTLAEAQARWEKERSLVSDILDLRARLRSEGVPLDAALSQQGATAPNPTVADENSSATREGEKEAPDGNADLARLKAIT QELAEMQGETPLMLLSVDRNAVASVVKDWTGIPVGRMLAGQTERALKLAGILGERVVGQDLAMEAIARRVRTSRAGLGSP EKPVGVFLLCGPSGVGKTETALALAEALYGGEQNLISINMSEFQEAHTVSTLKGAPPGYVGYGKGGILTEAVRRRPYSVI LLDEVEKAHPDVHEIFFQVFDKGMMDDSEGRRIDFRNTLILLTSNVGSDVIMRLTGNGVSRTPTEELEAALRTPLLQVFP AAFLGRVIVVPYYPLSDSMIEAIAQANFAKIAQRLRRSHNAELIIGEGVIDLVKARCTEVESGGRMIDAILTNTLLPALS TGILNWALDGRRLTKATVGASAEGFTYAFE >Mature_910_residues MQQNVSSHSFKRKELVGKLDPICLRAFRAAADAAKLRGNPYVELVHWIEQLALVDRADFQLILADAGVDLGRLAADMARS IDKLPYGATSIEEFSDHIFHAVQEAWSLGSLQFGSEEVRGAYVLLACRKVPVLDGLLLKISSEFDRIEADSVLARLDDVL SQSLENRGRREAGQPVRKERPAGGESALAKYATDLTSRAREGKIDPVVGRDPEIRQIVDILMRRRQNNPILTGEAGVGKT AVVEGFALRLVAEDVPPPLKGVALHMLDVGLMQAGASVKGEFEKRLKMVIDEVQSSETPIILFIDEAHTLIGAGGAAGTG DAANLLKPALARGELRTIAATTWAEYKQHIEKDPALTRRFQVVKIEEPSEESAVLMLRGVAGTLEKHHQVQILDEAIETA VSLSHRYIPARQLPDKAVSLLDTACARVAVSQHATPAEVEDLLRRKQALEIEQGIIGRERSIGIEVAERQARVDNALGEV ETTLAEAQARWEKERSLVSDILDLRARLRSEGVPLDAALSQQGATAPNPTVADENSSATREGEKEAPDGNADLARLKAIT QELAEMQGETPLMLLSVDRNAVASVVKDWTGIPVGRMLAGQTERALKLAGILGERVVGQDLAMEAIARRVRTSRAGLGSP EKPVGVFLLCGPSGVGKTETALALAEALYGGEQNLISINMSEFQEAHTVSTLKGAPPGYVGYGKGGILTEAVRRRPYSVI LLDEVEKAHPDVHEIFFQVFDKGMMDDSEGRRIDFRNTLILLTSNVGSDVIMRLTGNGVSRTPTEELEAALRTPLLQVFP AAFLGRVIVVPYYPLSDSMIEAIAQANFAKIAQRLRRSHNAELIIGEGVIDLVKARCTEVESGGRMIDAILTNTLLPALS TGILNWALDGRRLTKATVGASAEGFTYAFE
Specific function: Required for secretion of hcp1 probably by providing the energy source for its translocation [H]
COG id: COG0542
COG function: function code O; ATPases with chaperone activity, ATP-binding subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the clpA/clpB family [H]
Homologues:
Organism=Homo sapiens, GI13540606, Length=268, Percent_Identity=32.4626865671642, Blast_Score=148, Evalue=2e-35, Organism=Escherichia coli, GI1788943, Length=892, Percent_Identity=38.5650224215247, Blast_Score=541, Evalue=1e-155, Organism=Escherichia coli, GI1787109, Length=336, Percent_Identity=40.1785714285714, Blast_Score=234, Evalue=1e-62, Organism=Saccharomyces cerevisiae, GI6320464, Length=704, Percent_Identity=39.7727272727273, Blast_Score=471, Evalue=1e-133, Organism=Saccharomyces cerevisiae, GI6323002, Length=700, Percent_Identity=36.4285714285714, Blast_Score=434, Evalue=1e-122,
Paralogues:
None
Copy number: 560 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR013093 - InterPro: IPR003959 - InterPro: IPR017729 - InterPro: IPR018368 - InterPro: IPR001270 - InterPro: IPR019489 - InterPro: IPR023150 [H]
Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF10431 ClpB_D2-small [H]
EC number: NA
Molecular weight: Translated: 98649; Mature: 98649
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: PS00870 CLPAB_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQQNVSSHSFKRKELVGKLDPICLRAFRAAADAAKLRGNPYVELVHWIEQLALVDRADFQ CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCE LILADAGVDLGRLAADMARSIDKLPYGATSIEEFSDHIFHAVQEAWSLGSLQFGSEEVRG EEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCC AYVLLACRKVPVLDGLLLKISSEFDRIEADSVLARLDDVLSQSLENRGRREAGQPVRKER EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHCC PAGGESALAKYATDLTSRAREGKIDPVVGRDPEIRQIVDILMRRRQNNPILTGEAGVGKT CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCH AVVEGFALRLVAEDVPPPLKGVALHMLDVGLMQAGASVKGEFEKRLKMVIDEVQSSETPI HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCE ILFIDEAHTLIGAGGAAGTGDAANLLKPALARGELRTIAATTWAEYKQHIEKDPALTRRF EEEEECCCCEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHCE QVVKIEEPSEESAVLMLRGVAGTLEKHHQVQILDEAIETAVSLSHRYIPARQLPDKAVSL EEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHH LDTACARVAVSQHATPAEVEDLLRRKQALEIEQGIIGRERSIGIEVAERQARVDNALGEV HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH ETTLAEAQARWEKERSLVSDILDLRARLRSEGVPLDAALSQQGATAPNPTVADENSSATR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC EGEKEAPDGNADLARLKAITQELAEMQGETPLMLLSVDRNAVASVVKDWTGIPVGRMLAG CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCHHHHHHC QTERALKLAGILGERVVGQDLAMEAIARRVRTSRAGLGSPEKPVGVFLLCGPSGVGKTET CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHH ALALAEALYGGEQNLISINMSEFQEAHTVSTLKGAPPGYVGYGKGGILTEAVRRRPYSVI HHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEE LLDEVEKAHPDVHEIFFQVFDKGMMDDSEGRRIDFRNTLILLTSNVGSDVIMRLTGNGVS EEECHHHHCCCHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEECCCCCCEEEEEECCCCC RTPTEELEAALRTPLLQVFPAAFLGRVIVVPYYPLSDSMIEAIAQANFAKIAQRLRRSHN CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHCCC AELIIGEGVIDLVKARCTEVESGGRMIDAILTNTLLPALSTGILNWALDGRRLTKATVGA CEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCC SAEGFTYAFE CCCCCEEECC >Mature Secondary Structure MQQNVSSHSFKRKELVGKLDPICLRAFRAAADAAKLRGNPYVELVHWIEQLALVDRADFQ CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCE LILADAGVDLGRLAADMARSIDKLPYGATSIEEFSDHIFHAVQEAWSLGSLQFGSEEVRG EEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCC AYVLLACRKVPVLDGLLLKISSEFDRIEADSVLARLDDVLSQSLENRGRREAGQPVRKER EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHCC PAGGESALAKYATDLTSRAREGKIDPVVGRDPEIRQIVDILMRRRQNNPILTGEAGVGKT CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCH AVVEGFALRLVAEDVPPPLKGVALHMLDVGLMQAGASVKGEFEKRLKMVIDEVQSSETPI HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCE ILFIDEAHTLIGAGGAAGTGDAANLLKPALARGELRTIAATTWAEYKQHIEKDPALTRRF EEEEECCCCEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHCE QVVKIEEPSEESAVLMLRGVAGTLEKHHQVQILDEAIETAVSLSHRYIPARQLPDKAVSL EEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHH LDTACARVAVSQHATPAEVEDLLRRKQALEIEQGIIGRERSIGIEVAERQARVDNALGEV HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH ETTLAEAQARWEKERSLVSDILDLRARLRSEGVPLDAALSQQGATAPNPTVADENSSATR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC EGEKEAPDGNADLARLKAITQELAEMQGETPLMLLSVDRNAVASVVKDWTGIPVGRMLAG CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCHHHHHHC QTERALKLAGILGERVVGQDLAMEAIARRVRTSRAGLGSPEKPVGVFLLCGPSGVGKTET CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHH ALALAEALYGGEQNLISINMSEFQEAHTVSTLKGAPPGYVGYGKGGILTEAVRRRPYSVI HHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEE LLDEVEKAHPDVHEIFFQVFDKGMMDDSEGRRIDFRNTLILLTSNVGSDVIMRLTGNGVS EEECHHHHCCCHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEECCCCCCEEEEEECCCCC RTPTEELEAALRTPLLQVFPAAFLGRVIVVPYYPLSDSMIEAIAQANFAKIAQRLRRSHN CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHCCC AELIIGEGVIDLVKARCTEVESGGRMIDAILTNTLLPALSTGILNWALDGRRLTKATVGA CEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCC SAEGFTYAFE CCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]