| Definition | Rhizobium etli CIAT 652 plasmid pC, complete sequence. |
|---|---|
| Accession | NC_010997 |
| Length | 1,091,523 |
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The map label for this gene is 190895175
Identifier: 190895175
GI number: 190895175
Start: 929253
End: 930545
Strand: Reverse
Name: 190895175
Synonym: RHECIAT_PC0000848
Alternate gene names: NA
Gene position: 930545-929253 (Counterclockwise)
Preceding gene: 190895176
Following gene: 190895174
Centisome position: 85.25
GC content: 51.2
Gene sequence:
>1293_bases TTGCTGAAATTCGTCGTTGCGACCCTATTTGCGATCAACATGATGCTTGCCGTTGTGCTGGTGAGGCTGTCGGTTGGAGG GCTTCCCGTACGATTGCTCTTTGTCGCGATGCTACTTGCTGTGGTGGGCGCGTGTGAGCCCGGCCTTATCGTTCGCGCTG TTAAGGATCAAAGAAACCAGATATTTCTCATCGCCTTTTTGACGTTCTGTGCACTGCTATCCAGCGCGTTGGTTGGCGAC GGCTTCACTTACTCCATCGGTCAAGTTTTCCAGATCCACATCCAAGCGATCATCGGTTTGATTGTTGGGTATTGCGTAAT AACTATTGCTGGTTACAAATCGACGATTAGAATTTTTTTGCTACCGATCGCGATTTCGTCGATTTTTGCTGCCTTGCAGT TCGCAGGATTTTCGCCCGCGTGGTCCGCATACGACGCATTGTCCGCGTTACAACCTCGGGATCTCGCTGATTTCGAGGGA TTTGACGCCCACTACCGAGCGCTCGGCTTGTCATATAGTCCAGTGCACCTCGGAACACAGCTCTGCCTGGCCTTCGCTGT GATCTTCGCGTACCGTGTCAGTCAAGTTGGCCGGAATGCAATTCTAGCCACCTTGGATCGGAGACTGATTGCGACCATTG TGCTCACTGGTTTCGTTGCGATCTGCTCCGGAAACCGGTCGCCGATGCTCGGCTTAGCTGTTTTCTTCTGCCTGTATCTG GCGTCTGCTAAGCCAATGCTCGGATTGTTTGCGGGCCTTTTCATGGCAGCAGCGGTTCTGCTCGGAGATTCCATTATTGA GGCGATGAATTCCTCCGGGCTACGGACTTTCAACACAGAGAATAGTTCGGGCGAGGGACGATTGGTCCTTAGCGTCTACG GTTCAATGTTGTTCTTCTACCGACCATTCGGGTACGGCCTGTCATTCGACAGCGTCGCTCACTATTCCGAGTACTGGGAC CGACTGAAAAATTATCCTAATTCTCAAGCGATTACGATTCACGCGCTCCATAACTACTTTTTGATGTTTATAAATAAGCA TGGAGTGTTGGCACTTTTTGTCGTTCCATACTTACTACGCGCATTCTCAAGAAACTTGGTGGGCGTGCTGGCATTCGTTC CGTATCTCGTACACATATTTTATCACAACGATGGTCCGCTCCAGGCAGACTTCATGTTCTGGTACATAGTTCCCCTGGTG GCTCAGAATCCGGCGTTCTATTCGCACCAAGACGGAGCAGTGACGCGAACAGCAGTCCCCCGGAAACCAGCTCACATGAC GACTCTGCAGTGA
Upstream 100 bases:
>100_bases CCGCAGACACCCGTAGCTGAAGGTGTTCGGCGCTTTGTTGAATGGTATCGGCAAGCTTTTGAATTGAAAACCAAAGTTGT GGAACCGGTCGAGTAGCGCC
Downstream 100 bases:
>100_bases AGGTTGTGAGCTCACGCATTTTCGCACATTGGCTTTGTTTTCTCGTGGCGCTCTCGGCATTGGCATATGGGGGTGTCGCG GAACTCCCTTTCCTATTTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 430; Mature: 430
Protein sequence:
>430_residues MLKFVVATLFAINMMLAVVLVRLSVGGLPVRLLFVAMLLAVVGACEPGLIVRAVKDQRNQIFLIAFLTFCALLSSALVGD GFTYSIGQVFQIHIQAIIGLIVGYCVITIAGYKSTIRIFLLPIAISSIFAALQFAGFSPAWSAYDALSALQPRDLADFEG FDAHYRALGLSYSPVHLGTQLCLAFAVIFAYRVSQVGRNAILATLDRRLIATIVLTGFVAICSGNRSPMLGLAVFFCLYL ASAKPMLGLFAGLFMAAAVLLGDSIIEAMNSSGLRTFNTENSSGEGRLVLSVYGSMLFFYRPFGYGLSFDSVAHYSEYWD RLKNYPNSQAITIHALHNYFLMFINKHGVLALFVVPYLLRAFSRNLVGVLAFVPYLVHIFYHNDGPLQADFMFWYIVPLV AQNPAFYSHQDGAVTRTAVPRKPAHMTTLQ
Sequences:
>Translated_430_residues MLKFVVATLFAINMMLAVVLVRLSVGGLPVRLLFVAMLLAVVGACEPGLIVRAVKDQRNQIFLIAFLTFCALLSSALVGD GFTYSIGQVFQIHIQAIIGLIVGYCVITIAGYKSTIRIFLLPIAISSIFAALQFAGFSPAWSAYDALSALQPRDLADFEG FDAHYRALGLSYSPVHLGTQLCLAFAVIFAYRVSQVGRNAILATLDRRLIATIVLTGFVAICSGNRSPMLGLAVFFCLYL ASAKPMLGLFAGLFMAAAVLLGDSIIEAMNSSGLRTFNTENSSGEGRLVLSVYGSMLFFYRPFGYGLSFDSVAHYSEYWD RLKNYPNSQAITIHALHNYFLMFINKHGVLALFVVPYLLRAFSRNLVGVLAFVPYLVHIFYHNDGPLQADFMFWYIVPLV AQNPAFYSHQDGAVTRTAVPRKPAHMTTLQ >Mature_430_residues MLKFVVATLFAINMMLAVVLVRLSVGGLPVRLLFVAMLLAVVGACEPGLIVRAVKDQRNQIFLIAFLTFCALLSSALVGD GFTYSIGQVFQIHIQAIIGLIVGYCVITIAGYKSTIRIFLLPIAISSIFAALQFAGFSPAWSAYDALSALQPRDLADFEG FDAHYRALGLSYSPVHLGTQLCLAFAVIFAYRVSQVGRNAILATLDRRLIATIVLTGFVAICSGNRSPMLGLAVFFCLYL ASAKPMLGLFAGLFMAAAVLLGDSIIEAMNSSGLRTFNTENSSGEGRLVLSVYGSMLFFYRPFGYGLSFDSVAHYSEYWD RLKNYPNSQAITIHALHNYFLMFINKHGVLALFVVPYLLRAFSRNLVGVLAFVPYLVHIFYHNDGPLQADFMFWYIVPLV AQNPAFYSHQDGAVTRTAVPRKPAHMTTLQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47218; Mature: 47218
Theoretical pI: Translated: 9.17; Mature: 9.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKFVVATLFAINMMLAVVLVRLSVGGLPVRLLFVAMLLAVVGACEPGLIVRAVKDQRNQ CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC IFLIAFLTFCALLSSALVGDGFTYSIGQVFQIHIQAIIGLIVGYCVITIAGYKSTIRIFL EEHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH LPIAISSIFAALQFAGFSPAWSAYDALSALQPRDLADFEGFDAHYRALGLSYSPVHLGTQ HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHH LCLAFAVIFAYRVSQVGRNAILATLDRRLIATIVLTGFVAICSGNRSPMLGLAVFFCLYL HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH ASAKPMLGLFAGLFMAAAVLLGDSIIEAMNSSGLRTFNTENSSGEGRLVLSVYGSMLFFY HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEHHHHHHHHHHHH RPFGYGLSFDSVAHYSEYWDRLKNYPNSQAITIHALHNYFLMFINKHGVLALFVVPYLLR CCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHH AFSRNLVGVLAFVPYLVHIFYHNDGPLQADFMFWYIVPLVAQNPAFYSHQDGAVTRTAVP HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCC RKPAHMTTLQ CCCCCCCCCC >Mature Secondary Structure MLKFVVATLFAINMMLAVVLVRLSVGGLPVRLLFVAMLLAVVGACEPGLIVRAVKDQRNQ CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC IFLIAFLTFCALLSSALVGDGFTYSIGQVFQIHIQAIIGLIVGYCVITIAGYKSTIRIFL EEHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH LPIAISSIFAALQFAGFSPAWSAYDALSALQPRDLADFEGFDAHYRALGLSYSPVHLGTQ HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHH LCLAFAVIFAYRVSQVGRNAILATLDRRLIATIVLTGFVAICSGNRSPMLGLAVFFCLYL HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH ASAKPMLGLFAGLFMAAAVLLGDSIIEAMNSSGLRTFNTENSSGEGRLVLSVYGSMLFFY HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEHHHHHHHHHHHH RPFGYGLSFDSVAHYSEYWDRLKNYPNSQAITIHALHNYFLMFINKHGVLALFVVPYLLR CCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHH AFSRNLVGVLAFVPYLVHIFYHNDGPLQADFMFWYIVPLVAQNPAFYSHQDGAVTRTAVP HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCC RKPAHMTTLQ CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA