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The map label for this gene is repBc1 [H]

Identifier: 190894741

GI number: 190894741

Start: 431952

End: 432953

Strand: Reverse

Name: repBc1 [H]

Synonym: RHECIAT_PC0000406

Alternate gene names: 190894741

Gene position: 432953-431952 (Counterclockwise)

Preceding gene: 190894742

Following gene: 190894740

Centisome position: 39.67

GC content: 63.87

Gene sequence:

>1002_bases
ATGGCGCGCAAGAACCTGATCGAGATTTCCGCCCCGAACCCGGCAAGGGTGGAAGCGGTCGCACCGCGCGACAATCGTCC
GATTGCAGGCTTCGTGCCGCAGGAGCGTAGCGCTGCACCGGTCGGCGGCATCACCAAGACGCTCGGCAACATTACCGAAA
AAATGGAGCGTGCGAGCGAGCTCGAACGGCAGCTCGCCGCCGGCCAGGCCATCGTCGAACTCGACACCGGCCTGATCGAC
GCGTCCTTCGTCAGCGACCGGTTGGCGATCGATGCGGCCGAACTCGCGCAGCTTGTCGAGCAGATCCGCGAGCATGGGCA
GCAGGTTCCGATCCTCGTCCGTCCGCATCCGGAAACCAGGGGACGCTACCAGGTCGCTTACGGCCATCGCCGCCTTGCCG
CCACCAAAGAGCTCGGCATCAGGGTGCGCGCGGTCGTCCGCGACCTCACCGACGGTCAGCTGGTCGTCAGCCAGGGACAG
GAAAACAGCGCCCGAACCAATCTTTCTTATATCGAGCGCGCGCTCTTCGCCTCGAGGCTCGAGGAGCGCAGCTTCGGCCG
CGATGTGATCATGGCGGCGCTCGCCGTCGACAAGGCGGCGTTGTCGAGAATGCTGATCGTCATGCGGCAGGTTCCCCTCG
ATCTCATAAACGCCATTGGCGCGGCGCCCGATATTGGCCGCCGACGGTGGCTGGAGCTCGGCGAGCGGCTTGAGAAAGCC
GACGTCGGGAAGATCCTCGCAGAGTTGTCCGCGGACGACGCGCGCAGAATGTCAAGCGATGAGCGGTTTCAGCGGGCGCT
CGTTCTGGCAACAAAGACGACGGCGGTGCAAAGGCCGGCGGTGGCCAGAACCGAAGTCAGTGGCGTTCCCGTCATGATCA
AGAAGACAGCAGCGGGTGCGACCTTCGTCTTCGACGGCAAGATGGCGCCGGGCTTCGATCAATTCGTCCAGGAACGGCTG
CAAAGCCTGTTCCAGGAGTTCAAAAAGCACAGAGGAGCGTAG

Upstream 100 bases:

>100_bases
TTCACTCGCGGAACCTACGACCGGGCGCTGGAATCGCTCAATCTCGTGAACAGCGAGATCGAGGCGCATATTCGCTCGAC
CTGGGGAAGGAAATAGATAG

Downstream 100 bases:

>100_bases
CGCGCAAAAGAAAAAGGCCCCCAACGACGCCGTCGTGGAAGCCCTTCTCAGATCTTAAGCACATCGAGAATCGCATTTCC
ACGAATCACAGTCAAGCGTC

Product: plasmid partitioning protein RepBc1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MARKNLIEISAPNPARVEAVAPRDNRPIAGFVPQERSAAPVGGITKTLGNITEKMERASELERQLAAGQAIVELDTGLID
ASFVSDRLAIDAAELAQLVEQIREHGQQVPILVRPHPETRGRYQVAYGHRRLAATKELGIRVRAVVRDLTDGQLVVSQGQ
ENSARTNLSYIERALFASRLEERSFGRDVIMAALAVDKAALSRMLIVMRQVPLDLINAIGAAPDIGRRRWLELGERLEKA
DVGKILAELSADDARRMSSDERFQRALVLATKTTAVQRPAVARTEVSGVPVMIKKTAAGATFVFDGKMAPGFDQFVQERL
QSLFQEFKKHRGA

Sequences:

>Translated_333_residues
MARKNLIEISAPNPARVEAVAPRDNRPIAGFVPQERSAAPVGGITKTLGNITEKMERASELERQLAAGQAIVELDTGLID
ASFVSDRLAIDAAELAQLVEQIREHGQQVPILVRPHPETRGRYQVAYGHRRLAATKELGIRVRAVVRDLTDGQLVVSQGQ
ENSARTNLSYIERALFASRLEERSFGRDVIMAALAVDKAALSRMLIVMRQVPLDLINAIGAAPDIGRRRWLELGERLEKA
DVGKILAELSADDARRMSSDERFQRALVLATKTTAVQRPAVARTEVSGVPVMIKKTAAGATFVFDGKMAPGFDQFVQERL
QSLFQEFKKHRGA
>Mature_332_residues
ARKNLIEISAPNPARVEAVAPRDNRPIAGFVPQERSAAPVGGITKTLGNITEKMERASELERQLAAGQAIVELDTGLIDA
SFVSDRLAIDAAELAQLVEQIREHGQQVPILVRPHPETRGRYQVAYGHRRLAATKELGIRVRAVVRDLTDGQLVVSQGQE
NSARTNLSYIERALFASRLEERSFGRDVIMAALAVDKAALSRMLIVMRQVPLDLINAIGAAPDIGRRRWLELGERLEKAD
VGKILAELSADDARRMSSDERFQRALVLATKTTAVQRPAVARTEVSGVPVMIKKTAAGATFVFDGKMAPGFDQFVQERLQ
SLFQEFKKHRGA

Specific function: This protein is coded by a hairy root Ri plasmid, it is probably involved in its replication [H]

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115
- InterPro:   IPR017819
- InterPro:   IPR011111 [H]

Pfam domain/function: PF02195 ParBc; PF07506 RepB [H]

EC number: NA

Molecular weight: Translated: 36617; Mature: 36485

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKNLIEISAPNPARVEAVAPRDNRPIAGFVPQERSAAPVGGITKTLGNITEKMERASE
CCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LERQLAAGQAIVELDTGLIDASFVSDRLAIDAAELAQLVEQIREHGQQVPILVRPHPETR
HHHHHHHCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEECCCCCCC
GRYQVAYGHRRLAATKELGIRVRAVVRDLTDGQLVVSQGQENSARTNLSYIERALFASRL
CCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
EERSFGRDVIMAALAVDKAALSRMLIVMRQVPLDLINAIGAAPDIGRRRWLELGERLEKA
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
DVGKILAELSADDARRMSSDERFQRALVLATKTTAVQRPAVARTEVSGVPVMIKKTAAGA
HHHHHHHHHCHHHHHHCCHHHHHHHHHHHEEHHHHHCCCCHHHHHCCCCCEEEEECCCCE
TFVFDGKMAPGFDQFVQERLQSLFQEFKKHRGA
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ARKNLIEISAPNPARVEAVAPRDNRPIAGFVPQERSAAPVGGITKTLGNITEKMERASE
CCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LERQLAAGQAIVELDTGLIDASFVSDRLAIDAAELAQLVEQIREHGQQVPILVRPHPETR
HHHHHHHCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEECCCCCCC
GRYQVAYGHRRLAATKELGIRVRAVVRDLTDGQLVVSQGQENSARTNLSYIERALFASRL
CCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
EERSFGRDVIMAALAVDKAALSRMLIVMRQVPLDLINAIGAAPDIGRRRWLELGERLEKA
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
DVGKILAELSADDARRMSSDERFQRALVLATKTTAVQRPAVARTEVSGVPVMIKKTAAGA
HHHHHHHHHCHHHHHHCCHHHHHHHHHHHEEHHHHHCCCCHHHHHCCCCCEEEEECCCCE
TFVFDGKMAPGFDQFVQERLQSLFQEFKKHRGA
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA