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The map label for this gene is repCc1

Identifier: 190894740

GI number: 190894740

Start: 430494

End: 431798

Strand: Reverse

Name: repCc1

Synonym: RHECIAT_PC0000405

Alternate gene names: NA

Gene position: 431798-430494 (Counterclockwise)

Preceding gene: 190894741

Following gene: 190894738

Centisome position: 39.56

GC content: 62.84

Gene sequence:

>1305_bases
ATGGAGAGTGGATATGTGACGACGCCCTTTGGGCGGCGGCCGATGTCGCTTGGCATGCTGGCGAGCCAGCAACTGGCCGA
GACGATCGAGCCGGGGATGAAGCGCAGCAAGTGGAAACTGTTCCGGGCGATCTGCGAGGCGCGGCCAGCGCTCGGCGTAA
CCGATCGGGCGCTGACGGTGCTCGACGCGCTTTTGACCTTCTATCCCGATGACGAGATTTCCGAGGAGAAGGGCCTGATC
GTCTTTCCGTCGAATGCGCAGCTGTCGCTGCGTGCCCGCGGTATGACGCCGGCGACGCTGAGGCGCCATCTTGCCGTCCT
GGTCGAGGCCGGCCTGATCCTGCGCAAGGACAGCCCGAACGGAAAGCGCTATGCCCGCCGCGACAGGGCAGGGGCGATCG
GCGAGGCCTTCGGCTTCAGTGTCGCTCCGCTTCTGGCCCGCGCCGTCGAAATCGAAAACCTTGCGGCCCAGGTAATTGCC
GACCGGGAACTGCTCCGGGCGACGAGAGAACGCCTGACGGTCTGCCGGCGCGATATCTCCAAGCTGATCTCCACGGCCAT
CGATGAAGCCGTTCCCGGCGATTGGGAGCAGATGATGATGATGTTTCGCGATCTTGTCGCCAGGATCCCGCGTATGGCTG
GCATCGAAGAGCTGGTATCGTTGCTTGACGAAATGGGCCTGCTGCGTGACGAAGCGGTCAACCTGCTGGAAAGACACATT
AAACGAGAAAAAATAGACGCCAATGAGTCTCAAAATGAGCGTCACAAACAGAATTCAAACCCCGACTCCACCTCTGAACT
TGAACCACGCTTCGAAACGAAGCAGGGCGAAACGGCGGTGACAAACAACGAAGGGATGGCCGAACCGCTGGATGTGGGAA
GGCAGAAACCGCCGAGACCTTCCGCCGGATATGCTGGCAGAATGCAAGGCGCCGCCGATCCGGTCGCCGGCCACAGCCTG
AAATCCTTCCCGCTCGGCCTCGTCCTGCAGGCCTGCCCTGCTATTCTCGATTATGGGCCGGGCGGCGCGATCGGTAATTG
GCGCGACCTGATGTCGGCCGCCGTCATCGTCCGCTCGATGCTCGGCGTCAGCCCCTCGGCCTATGAGGAAGCCTGCGCCG
CCATGGGGCCGGAAAACGCCGCGACCGTGATCGCCTGCATCCTGGAACGGGGAGGACAGATCAACTCGCCCGGCGGCTAT
CTCCGCGATCTCACCCGCAGGGCCGAGAGAGGCGAATTTGCGATCGGACCGATGCTGATGGCGCTGGTGCGGGCCAATGG
CGGGGTAAGGCGACATGCCGGCTGA

Upstream 100 bases:

>100_bases
CTTAAGCACATCGAGAATCGCATTTCCACGAATCACAGTCAAGCGTCTTAGGCACCAAATTGGCGGATCGTTTTCTTTTG
CCTGAACGAAGGTGAAGGCA

Downstream 100 bases:

>100_bases
TGGATTTCAGCTGCAATGCGGTTGTGTAGTTGCCTCATCCGGTAAACTCACCGGTTCCAGTCCGATTGTCGGGCTGGACG
AAAGGTTGCGGCGAGAGGAG

Product: replication initiation protein RepC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MESGYVTTPFGRRPMSLGMLASQQLAETIEPGMKRSKWKLFRAICEARPALGVTDRALTVLDALLTFYPDDEISEEKGLI
VFPSNAQLSLRARGMTPATLRRHLAVLVEAGLILRKDSPNGKRYARRDRAGAIGEAFGFSVAPLLARAVEIENLAAQVIA
DRELLRATRERLTVCRRDISKLISTAIDEAVPGDWEQMMMMFRDLVARIPRMAGIEELVSLLDEMGLLRDEAVNLLERHI
KREKIDANESQNERHKQNSNPDSTSELEPRFETKQGETAVTNNEGMAEPLDVGRQKPPRPSAGYAGRMQGAADPVAGHSL
KSFPLGLVLQACPAILDYGPGGAIGNWRDLMSAAVIVRSMLGVSPSAYEEACAAMGPENAATVIACILERGGQINSPGGY
LRDLTRRAERGEFAIGPMLMALVRANGGVRRHAG

Sequences:

>Translated_434_residues
MESGYVTTPFGRRPMSLGMLASQQLAETIEPGMKRSKWKLFRAICEARPALGVTDRALTVLDALLTFYPDDEISEEKGLI
VFPSNAQLSLRARGMTPATLRRHLAVLVEAGLILRKDSPNGKRYARRDRAGAIGEAFGFSVAPLLARAVEIENLAAQVIA
DRELLRATRERLTVCRRDISKLISTAIDEAVPGDWEQMMMMFRDLVARIPRMAGIEELVSLLDEMGLLRDEAVNLLERHI
KREKIDANESQNERHKQNSNPDSTSELEPRFETKQGETAVTNNEGMAEPLDVGRQKPPRPSAGYAGRMQGAADPVAGHSL
KSFPLGLVLQACPAILDYGPGGAIGNWRDLMSAAVIVRSMLGVSPSAYEEACAAMGPENAATVIACILERGGQINSPGGY
LRDLTRRAERGEFAIGPMLMALVRANGGVRRHAG
>Mature_434_residues
MESGYVTTPFGRRPMSLGMLASQQLAETIEPGMKRSKWKLFRAICEARPALGVTDRALTVLDALLTFYPDDEISEEKGLI
VFPSNAQLSLRARGMTPATLRRHLAVLVEAGLILRKDSPNGKRYARRDRAGAIGEAFGFSVAPLLARAVEIENLAAQVIA
DRELLRATRERLTVCRRDISKLISTAIDEAVPGDWEQMMMMFRDLVARIPRMAGIEELVSLLDEMGLLRDEAVNLLERHI
KREKIDANESQNERHKQNSNPDSTSELEPRFETKQGETAVTNNEGMAEPLDVGRQKPPRPSAGYAGRMQGAADPVAGHSL
KSFPLGLVLQACPAILDYGPGGAIGNWRDLMSAAVIVRSMLGVSPSAYEEACAAMGPENAATVIACILERGGQINSPGGY
LRDLTRRAERGEFAIGPMLMALVRANGGVRRHAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.rhizogenes possible replication protein C (repC) [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005090
- InterPro:   IPR021760
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03428 RP-C; PF11800 RP-C_C [H]

EC number: NA

Molecular weight: Translated: 47338; Mature: 47338

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESGYVTTPFGRRPMSLGMLASQQLAETIEPGMKRSKWKLFRAICEARPALGVTDRALTV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LDALLTFYPDDEISEEKGLIVFPSNAQLSLRARGMTPATLRRHLAVLVEAGLILRKDSPN
HHHHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEECCCCC
GKRYARRDRAGAIGEAFGFSVAPLLARAVEIENLAAQVIADRELLRATRERLTVCRRDIS
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLISTAIDEAVPGDWEQMMMMFRDLVARIPRMAGIEELVSLLDEMGLLRDEAVNLLERHI
HHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KREKIDANESQNERHKQNSNPDSTSELEPRFETKQGETAVTNNEGMAEPLDVGRQKPPRP
HHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHCCCCCCCCC
SAGYAGRMQGAADPVAGHSLKSFPLGLVLQACPAILDYGPGGAIGNWRDLMSAAVIVRSM
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
LGVSPSAYEEACAAMGPENAATVIACILERGGQINSPGGYLRDLTRRAERGEFAIGPMLM
HCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH
ALVRANGGVRRHAG
HHHHHCCCCCCCCC
>Mature Secondary Structure
MESGYVTTPFGRRPMSLGMLASQQLAETIEPGMKRSKWKLFRAICEARPALGVTDRALTV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LDALLTFYPDDEISEEKGLIVFPSNAQLSLRARGMTPATLRRHLAVLVEAGLILRKDSPN
HHHHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEECCCCC
GKRYARRDRAGAIGEAFGFSVAPLLARAVEIENLAAQVIADRELLRATRERLTVCRRDIS
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLISTAIDEAVPGDWEQMMMMFRDLVARIPRMAGIEELVSLLDEMGLLRDEAVNLLERHI
HHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KREKIDANESQNERHKQNSNPDSTSELEPRFETKQGETAVTNNEGMAEPLDVGRQKPPRP
HHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHCCCCCCCCC
SAGYAGRMQGAADPVAGHSLKSFPLGLVLQACPAILDYGPGGAIGNWRDLMSAAVIVRSM
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
LGVSPSAYEEACAAMGPENAATVIACILERGGQINSPGGYLRDLTRRAERGEFAIGPMLM
HCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH
ALVRANGGVRRHAG
HHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]