Click here to switch to the map view.

The map label for this gene is pcaCc [H]

Identifier: 190894722

GI number: 190894722

Start: 409980

End: 410369

Strand: Reverse

Name: pcaCc [H]

Synonym: RHECIAT_PC0000387

Alternate gene names: 190894722

Gene position: 410369-409980 (Counterclockwise)

Preceding gene: 190894723

Following gene: 190894721

Centisome position: 37.6

GC content: 58.97

Gene sequence:

>390_bases
ATGGATGAGACGCTCAGAAAGAACGGCGAGGCCGTCAGGCGCAAAGTTCTCGGCGACGACTATGTCGACCGGGCGATGAA
CAATGCCGACAGCTTTTCCGCTCCTTTCCAGGACGTTCTCAACGAATATTGCTGGGGCGCGGCCTGGACCGACGAAGGGC
TCGATCTCAAGCAGCGTAGCCTTCTCAATCTCGGCATGCTGGCGGCGCTTAACCGCATGCATGAATTCGGCATCCACTTT
CGCGGCGCCATTCACAACGGGCTGACGGACGACGAATTGCGGGCCGCTCTCGTACAAATCGCAGTCTATTGCGGCATTCC
CGCCGGCGTAGAAGCCTTCCGGGTTGCCCGCTCCATTCGCGACGAGATGCGTCAGAAAGGAGAGTTCTGA

Upstream 100 bases:

>100_bases
CTCAGCATCCTGCCCGGATTGCGCCACTCCATCCTGATCGAGGCGCCGGAAACGGTTGCGAATTTGATGCGCGGCTTCCT
GACTCGCGAGGAGACGAACC

Downstream 100 bases:

>100_bases
CTTCCCCGGTTTGAAGGAACGAGCGGTCTGCCGCTGCTTCCGATCGCCGGAAGACGAAAAGGTCTCTTCGACTGCAAGAT
TGCATGACGGTACGGGAATG

Product: gamma-carboxymuconolactone decarboxylase

Products: NA

Alternate protein names: CMD [H]

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MDETLRKNGEAVRRKVLGDDYVDRAMNNADSFSAPFQDVLNEYCWGAAWTDEGLDLKQRSLLNLGMLAALNRMHEFGIHF
RGAIHNGLTDDELRAALVQIAVYCGIPAGVEAFRVARSIRDEMRQKGEF

Sequences:

>Translated_129_residues
MDETLRKNGEAVRRKVLGDDYVDRAMNNADSFSAPFQDVLNEYCWGAAWTDEGLDLKQRSLLNLGMLAALNRMHEFGIHF
RGAIHNGLTDDELRAALVQIAVYCGIPAGVEAFRVARSIRDEMRQKGEF
>Mature_129_residues
MDETLRKNGEAVRRKVLGDDYVDRAMNNADSFSAPFQDVLNEYCWGAAWTDEGLDLKQRSLLNLGMLAALNRMHEFGIHF
RGAIHNGLTDDELRAALVQIAVYCGIPAGVEAFRVARSIRDEMRQKGEF

Specific function: Unknown

COG id: COG0599

COG function: function code S; Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003779
- InterPro:   IPR012788 [H]

Pfam domain/function: PF02627 CMD [H]

EC number: =4.1.1.44 [H]

Molecular weight: Translated: 14533; Mature: 14533

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDETLRKNGEAVRRKVLGDDYVDRAMNNADSFSAPFQDVLNEYCWGAAWTDEGLDLKQRS
CCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH
LLNLGMLAALNRMHEFGIHFRGAIHNGLTDDELRAALVQIAVYCGIPAGVEAFRVARSIR
HHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
DEMRQKGEF
HHHHHCCCC
>Mature Secondary Structure
MDETLRKNGEAVRRKVLGDDYVDRAMNNADSFSAPFQDVLNEYCWGAAWTDEGLDLKQRS
CCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH
LLNLGMLAALNRMHEFGIHFRGAIHNGLTDDELRAALVQIAVYCGIPAGVEAFRVARSIR
HHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
DEMRQKGEF
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2298704 [H]