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The map label for this gene is ypdF [C]

Identifier: 190894709

GI number: 190894709

Start: 397874

End: 399055

Strand: Reverse

Name: ypdF [C]

Synonym: RHECIAT_PC0000374

Alternate gene names: 190894709

Gene position: 399055-397874 (Counterclockwise)

Preceding gene: 190894710

Following gene: 190894708

Centisome position: 36.56

GC content: 62.18

Gene sequence:

>1182_bases
ATGACCCAGCCCCATCTGAAGTTTTCGCTCGGCGAATATGCCGCGCGGCTGGAAAAGACACGGCGCGCCATGGAAGCGAA
GGGTGTCGACCTGCTTATTGTCAGCGACCCGTCGAATATGGCCTGGCTGACCGGCTATGACGGCTGGTCCTTTTACGTGC
ATCAGGCGGTGATCGTGCCGCCGCAGGGCGAACCGATCTGGTTCGGCCGCGGCCAGGACGCCAACGGCGCCAAGCTCACC
GCCTATCTGAAGCACGACAACATCGTCGGCTATCCCGATCATTACGTGCAATCGACCGAGCGCCACCCGATGGACTATCT
CTCCGGCATCCTGACCGAGCGCGGTTTCGGCAAGCTGACGATCGGTGTCGAGATGGACAATTACTGGTTTTCGGCGGCCG
CCTTTGCGGCGCTGCAGAAGCACCTGCCGAACGCCCGCTTCGTTGACGCGACCGCGCTGGTGAACTGGCAGCGCGCGGTC
AAGAGCGAGACCGAAATCCAATACATGCGCAATGCCGCCCGCATCGTCGAGGCGATGCATGCCCGCATCTTCGACAAGAT
CGAAGTCGGCATGCGCAAGTGCGATCTGGTGGCGGAAATCTATGATGCCGGCACCCGCGGCGTCGATGGCATCGGCGGCG
ATTATCCGGCGATCGTGCCGCTGCTGCCGTCCGGTGTCGAAGCATCCGCGCCGCATCTGACCTGGGACGACCGGCCGTTG
AAAAAGGGCGAGGGAACCTTCTTCGAAATCGCCGGCTGCTATAACCGCTATCACCTGCCGTTGTCGCGTACCGTCTTCCT
CGGCAAACCGACGCAGGCGTTTCTCGATGCCGAAAAAGCGACGCTGGAGGGCATGGAGGCCGGTCTTGCCGTCGCCAAGC
CCGGCAACACCTGCGAGGATATCGCCAACGCCTTCTTCGCGGTCCTGAAGAAATACGGCATCGTCAAGGACAACCGCACG
GGCTATCCGATCGGCCTTTCCTACCCGCCGGATTGGGGCGAGCGCACCATGAGCCTGCGGCCCGGCGACCGGACGGAGTT
AAAGCCCGGCATGACATTTCATTTCATGACCGGCCTGTGGCTCGACGACATGGGGTTCGAGACGACGGAGAGCATCCTCA
TCACCGAAAGCGGCGTCGAGTGCCTCGCCAACGTGCCGCGCAAGCTGATGGTCAAGGATTGA

Upstream 100 bases:

>100_bases
CCGCCATTGCCACGCTCGCCTTTGCCCGCGCCGACGCGGCGAAGGCCGGCACCACATTCGAAAGCTGACCGGCGCGGCGC
CGGAGAAGAAGGGAAGAGAT

Downstream 100 bases:

>100_bases
GGCTGTCATGACAGAGACCCGTTTGCGGCCGTCGCCGATCAGCGCGACGGTCGATTTCACCGCCGAGGGCGTCCAGCACG
GTTTCCTCAGGCTGCCTTAC

Product: putative Xaa-Pro dipeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MTQPHLKFSLGEYAARLEKTRRAMEAKGVDLLIVSDPSNMAWLTGYDGWSFYVHQAVIVPPQGEPIWFGRGQDANGAKLT
AYLKHDNIVGYPDHYVQSTERHPMDYLSGILTERGFGKLTIGVEMDNYWFSAAAFAALQKHLPNARFVDATALVNWQRAV
KSETEIQYMRNAARIVEAMHARIFDKIEVGMRKCDLVAEIYDAGTRGVDGIGGDYPAIVPLLPSGVEASAPHLTWDDRPL
KKGEGTFFEIAGCYNRYHLPLSRTVFLGKPTQAFLDAEKATLEGMEAGLAVAKPGNTCEDIANAFFAVLKKYGIVKDNRT
GYPIGLSYPPDWGERTMSLRPGDRTELKPGMTFHFMTGLWLDDMGFETTESILITESGVECLANVPRKLMVKD

Sequences:

>Translated_393_residues
MTQPHLKFSLGEYAARLEKTRRAMEAKGVDLLIVSDPSNMAWLTGYDGWSFYVHQAVIVPPQGEPIWFGRGQDANGAKLT
AYLKHDNIVGYPDHYVQSTERHPMDYLSGILTERGFGKLTIGVEMDNYWFSAAAFAALQKHLPNARFVDATALVNWQRAV
KSETEIQYMRNAARIVEAMHARIFDKIEVGMRKCDLVAEIYDAGTRGVDGIGGDYPAIVPLLPSGVEASAPHLTWDDRPL
KKGEGTFFEIAGCYNRYHLPLSRTVFLGKPTQAFLDAEKATLEGMEAGLAVAKPGNTCEDIANAFFAVLKKYGIVKDNRT
GYPIGLSYPPDWGERTMSLRPGDRTELKPGMTFHFMTGLWLDDMGFETTESILITESGVECLANVPRKLMVKD
>Mature_392_residues
TQPHLKFSLGEYAARLEKTRRAMEAKGVDLLIVSDPSNMAWLTGYDGWSFYVHQAVIVPPQGEPIWFGRGQDANGAKLTA
YLKHDNIVGYPDHYVQSTERHPMDYLSGILTERGFGKLTIGVEMDNYWFSAAAFAALQKHLPNARFVDATALVNWQRAVK
SETEIQYMRNAARIVEAMHARIFDKIEVGMRKCDLVAEIYDAGTRGVDGIGGDYPAIVPLLPSGVEASAPHLTWDDRPLK
KGEGTFFEIAGCYNRYHLPLSRTVFLGKPTQAFLDAEKATLEGMEAGLAVAKPGNTCEDIANAFFAVLKKYGIVKDNRTG
YPIGLSYPPDWGERTMSLRPGDRTELKPGMTFHFMTGLWLDDMGFETTESILITESGVECLANVPRKLMVKD

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24 family [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=258, Percent_Identity=24.4186046511628, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1789275, Length=354, Percent_Identity=25.7062146892655, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 43726; Mature: 43595

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: PS01159 WW_DOMAIN_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPHLKFSLGEYAARLEKTRRAMEAKGVDLLIVSDPSNMAWLTGYDGWSFYVHQAVIVP
CCCCCEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCEEEEEEEEEEEC
PQGEPIWFGRGQDANGAKLTAYLKHDNIVGYPDHYVQSTERHPMDYLSGILTERGFGKLT
CCCCEEEEECCCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCCHHHHHHHHHCCCCCEEE
IGVEMDNYWFSAAAFAALQKHLPNARFVDATALVNWQRAVKSETEIQYMRNAARIVEAMH
EEEEECCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
ARIFDKIEVGMRKCDLVAEIYDAGTRGVDGIGGDYPAIVPLLPSGVEASAPHLTWDDRPL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
KKGEGTFFEIAGCYNRYHLPLSRTVFLGKPTQAFLDAEKATLEGMEAGLAVAKPGNTCED
CCCCCCEEEEEECCCEEECCCEEEEEECCCHHHHHHHHHHHHHHHHCCEEEECCCCHHHH
IANAFFAVLKKYGIVKDNRTGYPIGLSYPPDWGERTMSLRPGDRTELKPGMTFHFMTGLW
HHHHHHHHHHHHCCEECCCCCCEEECCCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCE
LDDMGFETTESILITESGVECLANVPRKLMVKD
ECCCCCCCCCEEEEECCCHHHHHHCCHHHCCCC
>Mature Secondary Structure 
TQPHLKFSLGEYAARLEKTRRAMEAKGVDLLIVSDPSNMAWLTGYDGWSFYVHQAVIVP
CCCCEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCEEEEEEEEEEEC
PQGEPIWFGRGQDANGAKLTAYLKHDNIVGYPDHYVQSTERHPMDYLSGILTERGFGKLT
CCCCEEEEECCCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCCHHHHHHHHHCCCCCEEE
IGVEMDNYWFSAAAFAALQKHLPNARFVDATALVNWQRAVKSETEIQYMRNAARIVEAMH
EEEEECCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
ARIFDKIEVGMRKCDLVAEIYDAGTRGVDGIGGDYPAIVPLLPSGVEASAPHLTWDDRPL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
KKGEGTFFEIAGCYNRYHLPLSRTVFLGKPTQAFLDAEKATLEGMEAGLAVAKPGNTCED
CCCCCCEEEEEECCCEEECCCEEEEEECCCHHHHHHHHHHHHHHHHCCEEEECCCCHHHH
IANAFFAVLKKYGIVKDNRTGYPIGLSYPPDWGERTMSLRPGDRTELKPGMTFHFMTGLW
HHHHHHHHHHHHCCEECCCCCCEEECCCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCE
LDDMGFETTESILITESGVECLANVPRKLMVKD
ECCCCCCCCCEEEEECCCHHHHHHCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]