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The map label for this gene is ydfH [C]

Identifier: 190894682

GI number: 190894682

Start: 372057

End: 372779

Strand: Reverse

Name: ydfH [C]

Synonym: RHECIAT_PC0000345

Alternate gene names: 190894682

Gene position: 372779-372057 (Counterclockwise)

Preceding gene: 190894686

Following gene: 190894681

Centisome position: 34.15

GC content: 64.45

Gene sequence:

>723_bases
ATGAGGCAAGCCCCAGAAACCGACGCGCATCTCGTCCCGATTCCGTACGACGCCGGTCGCAGGCCGCGCCGCGTCACCAC
GGCCGGCGCCATTTATGAGCGTCTCTATGCCGATATCATCTCGCTGCGGATGCCGCCCGGCCTGTTTCTGCAGGAAAAAC
GGCTCGCGGACGAATTCGGCGTCAGCCGCACGCCGGTGCGTGAGGCGTTGCTGAGGCTCTCCGAAGGCGGACTGGTCGAT
ATCTTTCCACAGTCGGGTACCGTCGTATCGCGGGTGCCGGTCGCGGCGATCCCCGAGGCCGTCGTCGTGCGCAAGGCGCT
CGAAGGCACTACCGTCGAAATGGCGGCTGAGACTGCCACGCCAGCCGATATCGCCCGTCTTGATGCGATCATTGCCCGGC
AACGCTCGCATGCACCGGCCGGCGACACCGCAAGCTTCCACGAGGAGGATGAAGCCTTCCATGAGGCGATCGCGCAGATA
TCAGGTTATCCCGGGATCTGGGCGATTCTGAAGGCGGTCAAGGTGCAGCTCGACCGGGCCCGGCGGCTGACATTGCCGGC
ACTCGGGCGCATGGGCAATGTGGTGTCCGAACATATGATCATCCGCGACGCGCTGGCCGCCCATGACGCGGCGGCTGCGC
GTAGCGCCATGATCCGCCATTTGAGCGCCGTCATTCCCGATGTCGACGAGCTGCGCTCGCGTTACCCCAATTATTTCTGC
TGA

Upstream 100 bases:

>100_bases
TCAGAACGCTTGCCATACAACATGCCGGCGATTGGGTACCTTGGCAGGGCATCAAAACTGATATACTAGTATGCTAAAGA
CCAAAGCCCCGGTAGCGTTT

Downstream 100 bases:

>100_bases
CAACAGGACCACCACGAAACGAAAAGCTAGGGAAGGAAGAAGGATGCGGCAGGGTTGGAGATGGTTCGGGCCGGAGGCGC
CGGTGACGCTGGATGAGGTC

Product: putative GntR family transcriptional regulator

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MRQAPETDAHLVPIPYDAGRRPRRVTTAGAIYERLYADIISLRMPPGLFLQEKRLADEFGVSRTPVREALLRLSEGGLVD
IFPQSGTVVSRVPVAAIPEAVVVRKALEGTTVEMAAETATPADIARLDAIIARQRSHAPAGDTASFHEEDEAFHEAIAQI
SGYPGIWAILKAVKVQLDRARRLTLPALGRMGNVVSEHMIIRDALAAHDAAAARSAMIRHLSAVIPDVDELRSRYPNYFC

Sequences:

>Translated_240_residues
MRQAPETDAHLVPIPYDAGRRPRRVTTAGAIYERLYADIISLRMPPGLFLQEKRLADEFGVSRTPVREALLRLSEGGLVD
IFPQSGTVVSRVPVAAIPEAVVVRKALEGTTVEMAAETATPADIARLDAIIARQRSHAPAGDTASFHEEDEAFHEAIAQI
SGYPGIWAILKAVKVQLDRARRLTLPALGRMGNVVSEHMIIRDALAAHDAAAARSAMIRHLSAVIPDVDELRSRYPNYFC
>Mature_240_residues
MRQAPETDAHLVPIPYDAGRRPRRVTTAGAIYERLYADIISLRMPPGLFLQEKRLADEFGVSRTPVREALLRLSEGGLVD
IFPQSGTVVSRVPVAAIPEAVVVRKALEGTTVEMAAETATPADIARLDAIIARQRSHAPAGDTASFHEEDEAFHEAIAQI
SGYPGIWAILKAVKVQLDRARRLTLPALGRMGNVVSEHMIIRDALAAHDAAAARSAMIRHLSAVIPDVDELRSRYPNYFC

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=209, Percent_Identity=30.1435406698565, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI87081914, Length=176, Percent_Identity=26.7045454545455, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26232; Mature: 26232

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQAPETDAHLVPIPYDAGRRPRRVTTAGAIYERLYADIISLRMPPGLFLQEKRLADEFG
CCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
VSRTPVREALLRLSEGGLVDIFPQSGTVVSRVPVAAIPEAVVVRKALEGTTVEMAAETAT
CCCCHHHHHHHHHCCCCEEEECCCCCCEECCCCHHHCCHHHHHHHHHCCCHHHHHHHCCC
PADIARLDAIIARQRSHAPAGDTASFHEEDEAFHEAIAQISGYPGIWAILKAVKVQLDRA
HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
RRLTLPALGRMGNVVSEHMIIRDALAAHDAAAARSAMIRHLSAVIPDVDELRSRYPNYFC
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MRQAPETDAHLVPIPYDAGRRPRRVTTAGAIYERLYADIISLRMPPGLFLQEKRLADEFG
CCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
VSRTPVREALLRLSEGGLVDIFPQSGTVVSRVPVAAIPEAVVVRKALEGTTVEMAAETAT
CCCCHHHHHHHHHCCCCEEEECCCCCCEECCCCHHHCCHHHHHHHHHCCCHHHHHHHCCC
PADIARLDAIIARQRSHAPAGDTASFHEEDEAFHEAIAQISGYPGIWAILKAVKVQLDRA
HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
RRLTLPALGRMGNVVSEHMIIRDALAAHDAAAARSAMIRHLSAVIPDVDELRSRYPNYFC
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8277241; 1612449 [H]