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The map label for this gene is ydfC [H]

Identifier: 190894671

GI number: 190894671

Start: 360234

End: 361151

Strand: Reverse

Name: ydfC [H]

Synonym: RHECIAT_PC0000334

Alternate gene names: 190894671

Gene position: 361151-360234 (Counterclockwise)

Preceding gene: 190894673

Following gene: 190894670

Centisome position: 33.09

GC content: 65.25

Gene sequence:

>918_bases
ATGGAGGCAATAATGAGCATGGCAGCAAGCGCACCGGTTTCGGCGAAGGAGCAGGGCAGGTTTGATCTGGTGGCCTTTGC
AGCGATCGTCGTCACTATTCTCTTCTGGGCCTCCTCCTTCGTGGTCATCCGCATCTGCCTCGGGCCGCTGACGCCGATCG
AACTGGCGACGGCGCGCTATGTGGCCGCCGGTGCTCTCGCCCTCATCTACCTCGCCATCTATCGACCGATTCCCGAAAAA
CGCGACGTCTTGCGCCTCTCCGTTGCCGCCGTACTCTTCATCGCCGCCTATGCGGTTCTGTTGAACACCGGCGAGCAGAC
GGTTGCGGCGGGGCCGGCCAGCTTCATCATCAATACCATGCCGGTCTTTACCGCTCTCATCGCCACCTTCGCGCTCGGCG
AACGCTTCGGCCGCTGGGGCTGGGCGGGCACCGCGGTTTCCTTCGGCGGCGTGGCACTGATCGCAGTCGCCTCCGACGAC
GGTTTCAAGCTCGATCCGAATGCAGTCCTCATCCTCGGCGCGGCGCTCTGCTCGGCGATCGCCAGCGTGCTGCAGAAGCC
GCTGCTCGGCCGGCTGCCGGCGCTTGCCGTCACGGCCTGGATCCTGCTGATCGGCTCCGTGCCGCTCTTTCCAGCCGTAC
CGGCGACCGTCCGCGCGCTGGCGGCAGCTCCCGCCGAAGTCAATTGGGGCGTTGCCTATCTGGTCATCTTCCCGACCGCG
ATCGGCTATCTCACCTGGGCAATCGCGCTGAAGCGGCTGACGGCAGGTCGCGCCTCGAATTTCCTTTACGGCGGGCCGCC
AGTTGCAACCCTGATCGGTCTCGTCTGGCTCGGCGAAATGCCGACGGCACTGGGCGCGATCGGCGGCGTCATGGCGATCC
TCGGCGTCCTCGTGGTCAACCTCATGCGGAAACGCTGA

Upstream 100 bases:

>100_bases
GGCGGAAGCACGGGCGAGCTGTGAACCATGTGCACATTTGATCATCGATTGCGATGCTTTTCAAGCACGCGTGGTCGGCT
TAAATCGTGGTCAAACACCA

Downstream 100 bases:

>100_bases
TTGCACGGCGCGGCCGCCATCAGTCGGGGCGCAAAAACCTGGCCGCCGGCAATTAGGCATTGCGCCGCCCTTCGCTTTCT
TTAAAAACGAAAGCAGATCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MEAIMSMAASAPVSAKEQGRFDLVAFAAIVVTILFWASSFVVIRICLGPLTPIELATARYVAAGALALIYLAIYRPIPEK
RDVLRLSVAAVLFIAAYAVLLNTGEQTVAAGPASFIINTMPVFTALIATFALGERFGRWGWAGTAVSFGGVALIAVASDD
GFKLDPNAVLILGAALCSAIASVLQKPLLGRLPALAVTAWILLIGSVPLFPAVPATVRALAAAPAEVNWGVAYLVIFPTA
IGYLTWAIALKRLTAGRASNFLYGGPPVATLIGLVWLGEMPTALGAIGGVMAILGVLVVNLMRKR

Sequences:

>Translated_305_residues
MEAIMSMAASAPVSAKEQGRFDLVAFAAIVVTILFWASSFVVIRICLGPLTPIELATARYVAAGALALIYLAIYRPIPEK
RDVLRLSVAAVLFIAAYAVLLNTGEQTVAAGPASFIINTMPVFTALIATFALGERFGRWGWAGTAVSFGGVALIAVASDD
GFKLDPNAVLILGAALCSAIASVLQKPLLGRLPALAVTAWILLIGSVPLFPAVPATVRALAAAPAEVNWGVAYLVIFPTA
IGYLTWAIALKRLTAGRASNFLYGGPPVATLIGLVWLGEMPTALGAIGGVMAILGVLVVNLMRKR
>Mature_305_residues
MEAIMSMAASAPVSAKEQGRFDLVAFAAIVVTILFWASSFVVIRICLGPLTPIELATARYVAAGALALIYLAIYRPIPEK
RDVLRLSVAAVLFIAAYAVLLNTGEQTVAAGPASFIINTMPVFTALIATFALGERFGRWGWAGTAVSFGGVALIAVASDD
GFKLDPNAVLILGAALCSAIASVLQKPLLGRLPALAVTAWILLIGSVPLFPAVPATVRALAAAPAEVNWGVAYLVIFPTA
IGYLTWAIALKRLTAGRASNFLYGGPPVATLIGLVWLGEMPTALGAIGGVMAILGVLVVNLMRKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 31743; Mature: 31743

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAIMSMAASAPVSAKEQGRFDLVAFAAIVVTILFWASSFVVIRICLGPLTPIELATARY
CHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VAAGALALIYLAIYRPIPEKRDVLRLSVAAVLFIAAYAVLLNTGEQTVAAGPASFIINTM
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHH
PVFTALIATFALGERFGRWGWAGTAVSFGGVALIAVASDDGFKLDPNAVLILGAALCSAI
HHHHHHHHHHHHHHHHCCCCCCCHHHHCCCEEEEEEECCCCCEECCCHHHHHHHHHHHHH
ASVLQKPLLGRLPALAVTAWILLIGSVPLFPAVPATVRALAAAPAEVNWGVAYLVIFPTA
HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH
IGYLTWAIALKRLTAGRASNFLYGGPPVATLIGLVWLGEMPTALGAIGGVMAILGVLVVN
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LMRKR
HHHCC
>Mature Secondary Structure
MEAIMSMAASAPVSAKEQGRFDLVAFAAIVVTILFWASSFVVIRICLGPLTPIELATARY
CHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VAAGALALIYLAIYRPIPEKRDVLRLSVAAVLFIAAYAVLLNTGEQTVAAGPASFIINTM
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHH
PVFTALIATFALGERFGRWGWAGTAVSFGGVALIAVASDDGFKLDPNAVLILGAALCSAI
HHHHHHHHHHHHHHHHCCCCCCCHHHHCCCEEEEEEECCCCCEECCCHHHHHHHHHHHHH
ASVLQKPLLGRLPALAVTAWILLIGSVPLFPAVPATVRALAAAPAEVNWGVAYLVIFPTA
HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH
IGYLTWAIALKRLTAGRASNFLYGGPPVATLIGLVWLGEMPTALGAIGGVMAILGVLVVN
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LMRKR
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]