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The map label for this gene is yrbE [H]

Identifier: 190894602

GI number: 190894602

Start: 281651

End: 282688

Strand: Reverse

Name: yrbE [H]

Synonym: RHECIAT_PC0000265

Alternate gene names: 190894602

Gene position: 282688-281651 (Counterclockwise)

Preceding gene: 190894603

Following gene: 190894601

Centisome position: 25.9

GC content: 58.96

Gene sequence:

>1038_bases
ATGATCGGCATTGCTGTTGTTGGATATGGATATTGGGGTCCGAACCTGGTCCGCAATATTTCGGAGGCGGGCGGCGCACA
GCTCATTTCAGTCTGCGATCTCAACGTCGATCGGTTGGCAGCGGTCAAAAGCCGCTATCCCGCAGTGACGATCACCGATA
ATTTCGAGGAAGTCCTGCGTGATCCGAGAGTGGATGCAATCGCGATCGCGACGCCGGTCTCGACCCACTATAAGCTCGCA
ATGCAGGCTATGATGGCCGGAAAGCATGTCTTCGTCGAAAAGCCGATGGCATCGACGACGGAGGAAGCATCCCGGATGGT
CGAAGAGGCAGCGCGGCGACGCCTCGTGCTCGCCGTCGATCACACTTTCGTCCACACCGGCGCCGTCCGCAAGATGCGCG
AACTGGTCGAAAGCGGCCTTGGCGACATGTATTACTATGACTCGGTCCGGGTCAATCTGCGGCTGTTCCAGCACGATGTC
AGCGTCATCTGGGATCTTGCGGTGCACGACCTGTCGATCCTGGACCATGTCCTGCAGGAAAGGCCGGTGGCGGTTTCCGC
GACGGGGATGAGCCATGTGCTCGGCGAACCCGAGAATATCGCCTATCTGACGCTCTTTTTCGAGAGCAAGCTCATCGCCC
ACATCCACGTCAATTGGCTGGCGCCGGTCAAGGTGCGCCGCACGCTGATCGGCGGCAGCAACAAGATGATCGTCTATGAC
GATCTGGAGCCCAGCGAAAAGATCAAGGTCTACGACAAGGGCATCACCATGTGTCCCAACTCTGATGCATATGGCGAGAA
GGTCCATCAGATGCTGGTGGGATACCGCAGCGGCGACATGTGGGCGCCGAAGCTCGATATGACAGAGGCGTTGAAACGCG
AACTGGATCAGTTCGTCGATTGCGTCGAGCAGAATGCGCGGCCGATTACCGATGGCCAAGCAGGCCTGCGTGTCGTCCGC
ATCCTTGAAGCCGCAAGCCGGTCGCTCGCCCAGCGCGGTCGCATCATCGAGCTCGAAGAGGCGAGGCGCATTGCATGA

Upstream 100 bases:

>100_bases
AGGATGTGCCTGACGGCGCCATTGTTGCCGGTGTCCCGGCCAGGATCACCGGTCACGTTCATGACCGGTCAGTAAACATG
CAAGCGTTTGGAGGAATGCG

Downstream 100 bases:

>100_bases
TCCCGTTCCTGGACCTCAAGGCACAGTATAATTCCATCAAGAGCGAAATCGACGCCGCAGTGCTCGGCGTCCTGGCTTCG
GGGCAATACATATTGGGCGA

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MIGIAVVGYGYWGPNLVRNISEAGGAQLISVCDLNVDRLAAVKSRYPAVTITDNFEEVLRDPRVDAIAIATPVSTHYKLA
MQAMMAGKHVFVEKPMASTTEEASRMVEEAARRRLVLAVDHTFVHTGAVRKMRELVESGLGDMYYYDSVRVNLRLFQHDV
SVIWDLAVHDLSILDHVLQERPVAVSATGMSHVLGEPENIAYLTLFFESKLIAHIHVNWLAPVKVRRTLIGGSNKMIVYD
DLEPSEKIKVYDKGITMCPNSDAYGEKVHQMLVGYRSGDMWAPKLDMTEALKRELDQFVDCVEQNARPITDGQAGLRVVR
ILEAASRSLAQRGRIIELEEARRIA

Sequences:

>Translated_345_residues
MIGIAVVGYGYWGPNLVRNISEAGGAQLISVCDLNVDRLAAVKSRYPAVTITDNFEEVLRDPRVDAIAIATPVSTHYKLA
MQAMMAGKHVFVEKPMASTTEEASRMVEEAARRRLVLAVDHTFVHTGAVRKMRELVESGLGDMYYYDSVRVNLRLFQHDV
SVIWDLAVHDLSILDHVLQERPVAVSATGMSHVLGEPENIAYLTLFFESKLIAHIHVNWLAPVKVRRTLIGGSNKMIVYD
DLEPSEKIKVYDKGITMCPNSDAYGEKVHQMLVGYRSGDMWAPKLDMTEALKRELDQFVDCVEQNARPITDGQAGLRVVR
ILEAASRSLAQRGRIIELEEARRIA
>Mature_345_residues
MIGIAVVGYGYWGPNLVRNISEAGGAQLISVCDLNVDRLAAVKSRYPAVTITDNFEEVLRDPRVDAIAIATPVSTHYKLA
MQAMMAGKHVFVEKPMASTTEEASRMVEEAARRRLVLAVDHTFVHTGAVRKMRELVESGLGDMYYYDSVRVNLRLFQHDV
SVIWDLAVHDLSILDHVLQERPVAVSATGMSHVLGEPENIAYLTLFFESKLIAHIHVNWLAPVKVRRTLIGGSNKMIVYD
DLEPSEKIKVYDKGITMCPNSDAYGEKVHQMLVGYRSGDMWAPKLDMTEALKRELDQFVDCVEQNARPITDGQAGLRVVR
ILEAASRSLAQRGRIIELEEARRIA

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=267, Percent_Identity=28.0898876404494, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787574, Length=121, Percent_Identity=33.0578512396694, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082405, Length=241, Percent_Identity=25.3112033195021, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 38573; Mature: 38573

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGIAVVGYGYWGPNLVRNISEAGGAQLISVCDLNVDRLAAVKSRYPAVTITDNFEEVLR
CEEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCEEEEECCHHHHHC
DPRVDAIAIATPVSTHYKLAMQAMMAGKHVFVEKPMASTTEEASRMVEEAARRRLVLAVD
CCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCEEEEEEC
HTFVHTGAVRKMRELVESGLGDMYYYDSVRVNLRLFQHDVSVIWDLAVHDLSILDHVLQE
CHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHC
RPVAVSATGMSHVLGEPENIAYLTLFFESKLIAHIHVNWLAPVKVRRTLIGGSNKMIVYD
CCCEEEECCHHHHCCCCCCEEEEEEEECCCEEEEEEEEEECHHHHHHHHCCCCCCEEEEE
DLEPSEKIKVYDKGITMCPNSDAYGEKVHQMLVGYRSGDMWAPKLDMTEALKRELDQFVD
CCCCCCCEEEEECCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
CVEQNARPITDGQAGLRVVRILEAASRSLAQRGRIIELEEARRIA
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCC
>Mature Secondary Structure
MIGIAVVGYGYWGPNLVRNISEAGGAQLISVCDLNVDRLAAVKSRYPAVTITDNFEEVLR
CEEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCEEEEECCHHHHHC
DPRVDAIAIATPVSTHYKLAMQAMMAGKHVFVEKPMASTTEEASRMVEEAARRRLVLAVD
CCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCEEEEEEC
HTFVHTGAVRKMRELVESGLGDMYYYDSVRVNLRLFQHDVSVIWDLAVHDLSILDHVLQE
CHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHC
RPVAVSATGMSHVLGEPENIAYLTLFFESKLIAHIHVNWLAPVKVRRTLIGGSNKMIVYD
CCCEEEECCHHHHCCCCCCEEEEEEEECCCEEEEEEEEEECHHHHHHHHCCCCCCEEEEE
DLEPSEKIKVYDKGITMCPNSDAYGEKVHQMLVGYRSGDMWAPKLDMTEALKRELDQFVD
CCCCCCCEEEEECCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
CVEQNARPITDGQAGLRVVRILEAASRSLAQRGRIIELEEARRIA
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]