Click here to switch to the map view.

The map label for this gene is degT [H]

Identifier: 190894601

GI number: 190894601

Start: 280551

End: 281654

Strand: Reverse

Name: degT [H]

Synonym: RHECIAT_PC0000264

Alternate gene names: 190894601

Gene position: 281654-280551 (Counterclockwise)

Preceding gene: 190894602

Following gene: 190894600

Centisome position: 25.8

GC content: 61.78

Gene sequence:

>1104_bases
ATGATCCCGTTCCTGGACCTCAAGGCACAGTATAATTCCATCAAGAGCGAAATCGACGCCGCAGTGCTCGGCGTCCTGGC
TTCGGGGCAATACATATTGGGCGAGGAGGTCGCCCGCCTCGAGCAGGAATTCGCGGACTATTGCAACGTCAAACATGCGA
TCGCAGTCAACACCGGGACCAGCGCCCTGCATCTGTCGCTTCTCGCGGCCGGCGTCGGCCCCGGCGATGAAGTCATTACC
GTGCCGTTTACCTTCGTCGCGACCGTATCGGCGATCTGCTATACAGGCGCACGGCCTGTTTTCGTCGATGTCGAGCCGGT
GACGCTGACGATGGATCCGGCTCAGCTCGAGGCTAAGATTACACCCCGCACCAAGGCCATTATTCCCGTCCATCTCTACG
GGCAGATGGCTGACATGGACGCGATCCAGGCGATTGCCGACCACTACCGGATACCTGTTATCGAGGACGCATGCCAGGCG
CACGGCGCGCAATACAAAGGCGCGCGCGCCGGCAGCCTCGGCGCATCCGGCTGCTTCAGCTTCTATCCCGGTAAAAATCT
CGGCGCCTGCGGCGAGGGGGGTATCGTCGTGACCAACCGCGACGATCAGGCCAAAACAATGCGCATGCTGCGCGACTGGG
GCCAGGAGCAGCGCTATCACCATCTGCTGAAGGGCTTCAACTACCGCATGGACGCCATTCAGGGCGCGATCCTGCGCATC
AAGCTCAGGCACCTTGAGGCCTGGACCGAAGCGCGCCGCACTCATGCAGGCCGCTACTCGTCGCTGCTCGCGCGATCGGC
GCATTTGACGGCGCCTGTCGAGAAAGACGGCCGGCGCCACGTCTACCACGTCTATGCCATCAGAAGCCGCGATCGCGATG
AGCTTCAGCGCGCGCTGAGCGCCGAGGGCATTCAATCCGGGCTGCACTATCCGATCCCTGTTCATCTACAGAAGGCCCAT
GCCGACCTCGGTTACAAGACCGGCGATTTCCCCGTCTCGGAGGCCGCCGCAAAAGAGGTTCTCTCGCTGCCGATTTATCC
TGAGATGCCCGCGTGGCACGTCGATCAGGTGGCAGCTGCGTTGGAAGACGCCTATGTCAGCTGA

Upstream 100 bases:

>100_bases
GCCAAGCAGGCCTGCGTGTCGTCCGCATCCTTGAAGCCGCAAGCCGGTCGCTCGCCCAGCGCGGTCGCATCATCGAGCTC
GAAGAGGCGAGGCGCATTGC

Downstream 100 bases:

>100_bases
TCGTTCGGGCGAGGCCCGGATCGTGCATGCGGTCCATGGTCGTCAACAAAGGCCGGCGGATCCGGCCTACCAGGCGGGGT
TCGTTGAAGAGCTCAGGCAA

Product: putative aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MIPFLDLKAQYNSIKSEIDAAVLGVLASGQYILGEEVARLEQEFADYCNVKHAIAVNTGTSALHLSLLAAGVGPGDEVIT
VPFTFVATVSAICYTGARPVFVDVEPVTLTMDPAQLEAKITPRTKAIIPVHLYGQMADMDAIQAIADHYRIPVIEDACQA
HGAQYKGARAGSLGASGCFSFYPGKNLGACGEGGIVVTNRDDQAKTMRMLRDWGQEQRYHHLLKGFNYRMDAIQGAILRI
KLRHLEAWTEARRTHAGRYSSLLARSAHLTAPVEKDGRRHVYHVYAIRSRDRDELQRALSAEGIQSGLHYPIPVHLQKAH
ADLGYKTGDFPVSEAAAKEVLSLPIYPEMPAWHVDQVAAALEDAYVS

Sequences:

>Translated_367_residues
MIPFLDLKAQYNSIKSEIDAAVLGVLASGQYILGEEVARLEQEFADYCNVKHAIAVNTGTSALHLSLLAAGVGPGDEVIT
VPFTFVATVSAICYTGARPVFVDVEPVTLTMDPAQLEAKITPRTKAIIPVHLYGQMADMDAIQAIADHYRIPVIEDACQA
HGAQYKGARAGSLGASGCFSFYPGKNLGACGEGGIVVTNRDDQAKTMRMLRDWGQEQRYHHLLKGFNYRMDAIQGAILRI
KLRHLEAWTEARRTHAGRYSSLLARSAHLTAPVEKDGRRHVYHVYAIRSRDRDELQRALSAEGIQSGLHYPIPVHLQKAH
ADLGYKTGDFPVSEAAAKEVLSLPIYPEMPAWHVDQVAAALEDAYVS
>Mature_367_residues
MIPFLDLKAQYNSIKSEIDAAVLGVLASGQYILGEEVARLEQEFADYCNVKHAIAVNTGTSALHLSLLAAGVGPGDEVIT
VPFTFVATVSAICYTGARPVFVDVEPVTLTMDPAQLEAKITPRTKAIIPVHLYGQMADMDAIQAIADHYRIPVIEDACQA
HGAQYKGARAGSLGASGCFSFYPGKNLGACGEGGIVVTNRDDQAKTMRMLRDWGQEQRYHHLLKGFNYRMDAIQGAILRI
KLRHLEAWTEARRTHAGRYSSLLARSAHLTAPVEKDGRRHVYHVYAIRSRDRDELQRALSAEGIQSGLHYPIPVHLQKAH
ADLGYKTGDFPVSEAAAKEVLSLPIYPEMPAWHVDQVAAALEDAYVS

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=361, Percent_Identity=38.2271468144044, Blast_Score=211, Evalue=7e-56,
Organism=Escherichia coli, GI2367285, Length=348, Percent_Identity=31.3218390804598, Blast_Score=148, Evalue=5e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 40174; Mature: 40174

Theoretical pI: Translated: 6.83; Mature: 6.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPFLDLKAQYNSIKSEIDAAVLGVLASGQYILGEEVARLEQEFADYCNVKHAIAVNTGT
CCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
SALHLSLLAAGVGPGDEVITVPFTFVATVSAICYTGARPVFVDVEPVTLTMDPAQLEAKI
HHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCEEEEECCEEEEEECHHHEEEEE
TPRTKAIIPVHLYGQMADMDAIQAIADHYRIPVIEDACQAHGAQYKGARAGSLGASGCFS
CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEE
FYPGKNLGACGEGGIVVTNRDDQAKTMRMLRDWGQEQRYHHLLKGFNYRMDAIQGAILRI
ECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHCCHHEEE
KLRHLEAWTEARRTHAGRYSSLLARSAHLTAPVEKDGRRHVYHVYAIRSRDRDELQRALS
HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHH
AEGIQSGLHYPIPVHLQKAHADLGYKTGDFPVSEAAAKEVLSLPIYPEMPAWHVDQVAAA
HHHHHCCCCCCCCEEEEHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
LEDAYVS
HHHHCCC
>Mature Secondary Structure
MIPFLDLKAQYNSIKSEIDAAVLGVLASGQYILGEEVARLEQEFADYCNVKHAIAVNTGT
CCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
SALHLSLLAAGVGPGDEVITVPFTFVATVSAICYTGARPVFVDVEPVTLTMDPAQLEAKI
HHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCEEEEECCEEEEEECHHHEEEEE
TPRTKAIIPVHLYGQMADMDAIQAIADHYRIPVIEDACQAHGAQYKGARAGSLGASGCFS
CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEE
FYPGKNLGACGEGGIVVTNRDDQAKTMRMLRDWGQEQRYHHLLKGFNYRMDAIQGAILRI
ECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHCCHHEEE
KLRHLEAWTEARRTHAGRYSSLLARSAHLTAPVEKDGRRHVYHVYAIRSRDRDELQRALS
HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHH
AEGIQSGLHYPIPVHLQKAHADLGYKTGDFPVSEAAAKEVLSLPIYPEMPAWHVDQVAAA
HHHHHCCCCCCCCEEEEHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
LEDAYVS
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]