| Definition | Rhizobium etli CIAT 652 plasmid pC, complete sequence. |
|---|---|
| Accession | NC_010997 |
| Length | 1,091,523 |
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The map label for this gene is 190894483
Identifier: 190894483
GI number: 190894483
Start: 140244
End: 140765
Strand: Reverse
Name: 190894483
Synonym: RHECIAT_PC0000145
Alternate gene names: NA
Gene position: 140765-140244 (Counterclockwise)
Preceding gene: 190894484
Following gene: 190894482
Centisome position: 12.9
GC content: 62.84
Gene sequence:
>522_bases ATGGCTGACGAATTTTCCGCGCCGGAAGGAGAACGCAGCCGGTCTGCGAGCGCCTCTCCGACCACTGAGCTGAGAGATAA GATCCGCGACGATATCAGTTCGACCAGGGAGCTGGTGAAGGAGACATCCGCAGCCGGCCTGGAAGAGGCAAAGGAAGCGG TTTCCGAGCAGGCGCACTTTGCCGCTCGCCAGATGAGCGGTGTTGCAACTGCACTCGAAAAGGTCGGGGCGGAACTGGAG CGCTCTGACCAACGGCAGGTCGGCCGCTACGCTCGGCAGCTCGGCCGCAGCGTTGCCAGTGCGGCAAGGCGGGTAGAGGG CAAGAACCTCGACGAGATGGCTGTGCTGGCTGAGGATTTCGGCCGCAGGCAACCGATCGCATTTCTGGGAATTGCGGCCC TCGCTGGGCTGACCGCGAGCCGGTTTCTGACTGCCTCCGCGAAACGCGCCGAGAAAGCTCGGACGCCTGCTCCAGCGGCA CAGGCATTCGCTTCGGCAAGCAAGGATAACCAAAATGGCTAG
Upstream 100 bases:
>100_bases GTCGACTGGGAAGCAAGCCGAGGAACTTCTTACTCTGCTGGAACAAAGCCCGAAGATCGCGGTTCGGCGCCCACGAACAT TCCAAGTCAGGGAGGCCTCG
Downstream 100 bases:
>100_bases GCCATCAGAAAACACACCATTGGCCGAACTGATCGGCGGCCTTTTGAATGACGTCGCTGGTCTTCTGCGCAAGGAGATCG ACCTCGCCAAAACCGAAGCA
Product: putative nutrient deprivation-induced protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 173; Mature: 172
Protein sequence:
>173_residues MADEFSAPEGERSRSASASPTTELRDKIRDDISSTRELVKETSAAGLEEAKEAVSEQAHFAARQMSGVATALEKVGAELE RSDQRQVGRYARQLGRSVASAARRVEGKNLDEMAVLAEDFGRRQPIAFLGIAALAGLTASRFLTASAKRAEKARTPAPAA QAFASASKDNQNG
Sequences:
>Translated_173_residues MADEFSAPEGERSRSASASPTTELRDKIRDDISSTRELVKETSAAGLEEAKEAVSEQAHFAARQMSGVATALEKVGAELE RSDQRQVGRYARQLGRSVASAARRVEGKNLDEMAVLAEDFGRRQPIAFLGIAALAGLTASRFLTASAKRAEKARTPAPAA QAFASASKDNQNG >Mature_172_residues ADEFSAPEGERSRSASASPTTELRDKIRDDISSTRELVKETSAAGLEEAKEAVSEQAHFAARQMSGVATALEKVGAELER SDQRQVGRYARQLGRSVASAARRVEGKNLDEMAVLAEDFGRRQPIAFLGIAALAGLTASRFLTASAKRAEKARTPAPAAQ AFASASKDNQNG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18409; Mature: 18277
Theoretical pI: Translated: 9.08; Mature: 9.08
Prosite motif: PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADEFSAPEGERSRSASASPTTELRDKIRDDISSTRELVKETSAAGLEEAKEAVSEQAHF CCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH AARQMSGVATALEKVGAELERSDQRQVGRYARQLGRSVASAARRVEGKNLDEMAVLAEDF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH GRRQPIAFLGIAALAGLTASRFLTASAKRAEKARTPAPAAQAFASASKDNQNG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCC >Mature Secondary Structure ADEFSAPEGERSRSASASPTTELRDKIRDDISSTRELVKETSAAGLEEAKEAVSEQAHF CCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH AARQMSGVATALEKVGAELERSDQRQVGRYARQLGRSVASAARRVEGKNLDEMAVLAEDF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH GRRQPIAFLGIAALAGLTASRFLTASAKRAEKARTPAPAAQAFASASKDNQNG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA