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The map label for this gene is glcD [H]

Identifier: 190894433

GI number: 190894433

Start: 90022

End: 91431

Strand: Reverse

Name: glcD [H]

Synonym: RHECIAT_PC0000095

Alternate gene names: 190894433

Gene position: 91431-90022 (Counterclockwise)

Preceding gene: 190894434

Following gene: 190894432

Centisome position: 8.38

GC content: 62.27

Gene sequence:

>1410_bases
ATGCCGGATTATCAGACGATCAAGAAGGAACTCGAAGGCATCGCCGTCGAGGACAATCCGGCGCTGGTGCGCCAGAAGAG
CCGGGACTTCTACTGGTATTCGCCGATCCTGAAGGCGCAGCTCGACAATGTGACGGCCGACCTCGTGGTCACGCCGAAGA
CCGAGGAAGAGGTCATCCGCACGCTGAAGGTGGCCTTCGCCCATGGTGTGCCGGTAACGCCGCGCGGCGCCGGCACCGGC
AATTACGGCCAGGCCATGCCGCTTTCCGGCGGCATCGTCCTGAACCTTGCCGGCATGGACAAGGTCAAGGAAATCCATCC
CGGCCGGGTGATCTGCGAACCGGGCATCGTGATTGCGCAATTAGACAGGCAAACCAAGGCGCATTCCGGCCAGGAGCTGC
GCTTCCATCCATCGACGGCGCAGACGGCGACTGTCGGCGGTTTCATCGCCGGCGGCTCCGGCGGCGTCGGCTCGATCACC
TGGGGCGGCCTGCGCGATCTCGGCAATATTCTGCGCCTGCGCGTCGTCACCATGGAAGCCGAACCGCGCGTGCTCGACCT
CACCGGCTGGGACCTGCAGAAGGTCAGCCATGCCTACGGCACCAACGGCATCATCACCGAGATCGAAATGCCGCTGGCGC
CCGCCTATGGCTGGGTCGACGTGCTCGTCGGTTACGACGACTTCATGGCGGCCGTGCGCTTCTCGGATGCGCTGGCCAAA
TGCAACGGCATCCTCGTGAAGGAGATCGCGCCGATCGCCGCACCCATTCCGCATGATTATTTCACGCGCCACAAGCCCTA
TATTCGCAAGGGCCAGTCGGTGGTGGTGCTGATGATCGCGCCGCATTCCATGGACGCGTTCCTGGCCTTCGCCGCCGCGC
ACAAGGGCGAGGTCATCTTCCGCTCCGATACGGTCGAAAGCATGAAGGGCATTCCGCATGCTTATGAGCTTGCCTGGAAC
CACACGACGCTGCGTGCCCTGAAGGTTGAACCCAACTTCACCTATCTGCAGGTTCAATATCCGGGGCCGGATCACGTGGC
CAAGGTCGCCAAGATGGTCGAGATCTTCGGGGACGAAGTGCCGGGCCATCTCGAATTCATCAGGTTCGACGGGCAGATCC
AGTGCTCCGGTCTGCCGCTGGTGCGCTATACCTCGGAGGAACGCCTCGAGGAGATCATCAGGATCCACCAGGACCACGGC
TGCCCGATCTTCAATCCGCACCGCTACACGCTCGAGGAAGGTGGCATGAAACGCACCGACAAGGTGCAGCTCGCCTTCAA
GCACGAGACCGACCCGAGGGGGCTCCTGAACCCCGGCAAGATGATCGCCTGGGAGAACCCGGATTTCGATTTCGATGCCG
GCAAGAACTATCTCTTCCCAGGACTTGCGAGCGTCATGGAGGCCTCATGA

Upstream 100 bases:

>100_bases
TCCCGTCCGCAGTCAGACCGCATCGTCCTTCGCCGCGGCAAGGTGATTGACCGCAGCCTGCCGGACTATCGTGAACTCGA
CAGCGTCGTTGGAGCCTGAC

Downstream 100 bases:

>100_bases
GAGTTGTCGTCCTTCACTCGCATCCGGTCGAGGAAAGCTACGGCAAGGCGCTTTACAAACAAACGCTGGAAAGCCTTCGC
AAAGCCGGTCACGAGGTGGA

Product: putative FAD linked oxidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 468

Protein sequence:

>469_residues
MPDYQTIKKELEGIAVEDNPALVRQKSRDFYWYSPILKAQLDNVTADLVVTPKTEEEVIRTLKVAFAHGVPVTPRGAGTG
NYGQAMPLSGGIVLNLAGMDKVKEIHPGRVICEPGIVIAQLDRQTKAHSGQELRFHPSTAQTATVGGFIAGGSGGVGSIT
WGGLRDLGNILRLRVVTMEAEPRVLDLTGWDLQKVSHAYGTNGIITEIEMPLAPAYGWVDVLVGYDDFMAAVRFSDALAK
CNGILVKEIAPIAAPIPHDYFTRHKPYIRKGQSVVVLMIAPHSMDAFLAFAAAHKGEVIFRSDTVESMKGIPHAYELAWN
HTTLRALKVEPNFTYLQVQYPGPDHVAKVAKMVEIFGDEVPGHLEFIRFDGQIQCSGLPLVRYTSEERLEEIIRIHQDHG
CPIFNPHRYTLEEGGMKRTDKVQLAFKHETDPRGLLNPGKMIAWENPDFDFDAGKNYLFPGLASVMEAS

Sequences:

>Translated_469_residues
MPDYQTIKKELEGIAVEDNPALVRQKSRDFYWYSPILKAQLDNVTADLVVTPKTEEEVIRTLKVAFAHGVPVTPRGAGTG
NYGQAMPLSGGIVLNLAGMDKVKEIHPGRVICEPGIVIAQLDRQTKAHSGQELRFHPSTAQTATVGGFIAGGSGGVGSIT
WGGLRDLGNILRLRVVTMEAEPRVLDLTGWDLQKVSHAYGTNGIITEIEMPLAPAYGWVDVLVGYDDFMAAVRFSDALAK
CNGILVKEIAPIAAPIPHDYFTRHKPYIRKGQSVVVLMIAPHSMDAFLAFAAAHKGEVIFRSDTVESMKGIPHAYELAWN
HTTLRALKVEPNFTYLQVQYPGPDHVAKVAKMVEIFGDEVPGHLEFIRFDGQIQCSGLPLVRYTSEERLEEIIRIHQDHG
CPIFNPHRYTLEEGGMKRTDKVQLAFKHETDPRGLLNPGKMIAWENPDFDFDAGKNYLFPGLASVMEAS
>Mature_468_residues
PDYQTIKKELEGIAVEDNPALVRQKSRDFYWYSPILKAQLDNVTADLVVTPKTEEEVIRTLKVAFAHGVPVTPRGAGTGN
YGQAMPLSGGIVLNLAGMDKVKEIHPGRVICEPGIVIAQLDRQTKAHSGQELRFHPSTAQTATVGGFIAGGSGGVGSITW
GGLRDLGNILRLRVVTMEAEPRVLDLTGWDLQKVSHAYGTNGIITEIEMPLAPAYGWVDVLVGYDDFMAAVRFSDALAKC
NGILVKEIAPIAAPIPHDYFTRHKPYIRKGQSVVVLMIAPHSMDAFLAFAAAHKGEVIFRSDTVESMKGIPHAYELAWNH
TTLRALKVEPNFTYLQVQYPGPDHVAKVAKMVEIFGDEVPGHLEFIRFDGQIQCSGLPLVRYTSEERLEEIIRIHQDHGC
PIFNPHRYTLEEGGMKRTDKVQLAFKHETDPRGLLNPGKMIAWENPDFDFDAGKNYLFPGLASVMEAS

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI37595756, Length=181, Percent_Identity=30.939226519337, Blast_Score=72, Evalue=2e-12,
Organism=Homo sapiens, GI37595754, Length=132, Percent_Identity=34.0909090909091, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI119964728, Length=215, Percent_Identity=27.906976744186, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI1789351, Length=210, Percent_Identity=31.4285714285714, Blast_Score=76, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6320764, Length=177, Percent_Identity=27.1186440677966, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6320023, Length=180, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 51761; Mature: 51630

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDYQTIKKELEGIAVEDNPALVRQKSRDFYWYSPILKAQLDNVTADLVVTPKTEEEVIR
CCCHHHHHHHHCCEEECCCCHHHHCCCCCEEEECHHHHHHHCCCEEEEEECCCCHHHHHH
TLKVAFAHGVPVTPRGAGTGNYGQAMPLSGGIVLNLAGMDKVKEIHPGRVICEPGIVIAQ
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHCCCCEEEECCCEEEEE
LDRQTKAHSGQELRFHPSTAQTATVGGFIAGGSGGVGSITWGGLRDLGNILRLRVVTMEA
ECCHHHHCCCCEEEECCCCCCEEECCEEEECCCCCCCCCCCCCHHHHHHEEEEEEEEEEC
EPRVLDLTGWDLQKVSHAYGTNGIITEIEMPLAPAYGWVDVLVGYDDFMAAVRFSDALAK
CCCEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCCCHHHEEECCHHHHHHHHHHHHHHH
CNGILVKEIAPIAAPIPHDYFTRHKPYIRKGQSVVVLMIAPHSMDAFLAFAAAHKGEVIF
HCCEEEEHHCHHCCCCCCHHHHCCCCHHHCCCEEEEEEEECCCHHHHHHHHHHCCCCEEE
RSDTVESMKGIPHAYELAWNHTTLRALKVEPNFTYLQVQYPGPDHVAKVAKMVEIFGDEV
ECCCHHHHHCCCCEEEEEECCEEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCC
PGHLEFIRFDGQIQCSGLPLVRYTSEERLEEIIRIHQDHGCPIFNPHRYTLEEGGMKRTD
CCCEEEEEECCEEEECCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCC
KVQLAFKHETDPRGLLNPGKMIAWENPDFDFDAGKNYLFPGLASVMEAS
EEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
PDYQTIKKELEGIAVEDNPALVRQKSRDFYWYSPILKAQLDNVTADLVVTPKTEEEVIR
CCHHHHHHHHCCEEECCCCHHHHCCCCCEEEECHHHHHHHCCCEEEEEECCCCHHHHHH
TLKVAFAHGVPVTPRGAGTGNYGQAMPLSGGIVLNLAGMDKVKEIHPGRVICEPGIVIAQ
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHCCCCEEEECCCEEEEE
LDRQTKAHSGQELRFHPSTAQTATVGGFIAGGSGGVGSITWGGLRDLGNILRLRVVTMEA
ECCHHHHCCCCEEEECCCCCCEEECCEEEECCCCCCCCCCCCCHHHHHHEEEEEEEEEEC
EPRVLDLTGWDLQKVSHAYGTNGIITEIEMPLAPAYGWVDVLVGYDDFMAAVRFSDALAK
CCCEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCCCHHHEEECCHHHHHHHHHHHHHHH
CNGILVKEIAPIAAPIPHDYFTRHKPYIRKGQSVVVLMIAPHSMDAFLAFAAAHKGEVIF
HCCEEEEHHCHHCCCCCCHHHHCCCCHHHCCCEEEEEEEECCCHHHHHHHHHHCCCCEEE
RSDTVESMKGIPHAYELAWNHTTLRALKVEPNFTYLQVQYPGPDHVAKVAKMVEIFGDEV
ECCCHHHHHCCCCEEEEEECCEEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCC
PGHLEFIRFDGQIQCSGLPLVRYTSEERLEEIIRIHQDHGCPIFNPHRYTLEEGGMKRTD
CCCEEEEEECCEEEECCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCC
KVQLAFKHETDPRGLLNPGKMIAWENPDFDFDAGKNYLFPGLASVMEAS
EEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]