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The map label for this gene is nlpD [H]

Identifier: 190571142

GI number: 190571142

Start: 806890

End: 807480

Strand: Direct

Name: nlpD [H]

Synonym: WPa_0740

Alternate gene names: 190571142

Gene position: 806890-807480 (Clockwise)

Preceding gene: 190571141

Following gene: 190571143

Centisome position: 54.43

GC content: 35.03

Gene sequence:

>591_bases
ATGTGTCGTATAGCCTTGTTCTTTATATTATCAGCAATACTGATAAGCTGTGGCCTGCAAAAACCTGCACCTGTACTACT
TAAAGGCGAAGAATTTTATGGGAAAAGAGACCTAGAGTACACAAGGGAGTATCATTTGATTAAAGAAAATGTTGATTCTT
CGCTGCGAAAAGAAAGTAGAAAAGCCTTTGTAGATAAGGTATATAACAATAATGCACAAAGCATGTGTAAATTTGTAATA
CCGGTTAAAGGTGCAGTTACCTCTTCTGATAAAATATGTCAAGATGGCATAAAAATTACTGCTCAAAGTGGAACAAAGGT
TATTGCTTCTGCACCTGGCAAAGTAATATACGTAGGCAAAGGCCTGAGGTGGTACGGAAATTTAATTATAGTGGAACATA
AAGATAATTACATGACTATGTACTCCTATTTAAAAAACATACAAGTTGAAATTGGTGATAAAGTAAAACAAGGTCAAGTA
ATTGGATCTGCAGGTAAATCAAGCACACAAGATAAAGATCCGCAGATGTGTTTCACAATAAGACATAATGGTCAAGCAGT
CGATCCTTTAGTACATATAAACTGTGATTGA

Upstream 100 bases:

>100_bases
TTAAGAGACTATTTGACTGATAAAATAAATGAAGAAAGTAATAAATAGACGAAAAACACTATAAAGTTTTGTGAAAGTTG
ATATATCTAGAGATAAGTGT

Downstream 100 bases:

>100_bases
ATTTATGAAATATGATTTTAAAAACGTTGAAAAATTCTACCAAAATAAGTGGGATTTTTCTGTAAGCAAAGATAGTAAAA
AGAAGAAATGTTACGTGTTG

Product: Putative Lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MCRIALFFILSAILISCGLQKPAPVLLKGEEFYGKRDLEYTREYHLIKENVDSSLRKESRKAFVDKVYNNNAQSMCKFVI
PVKGAVTSSDKICQDGIKITAQSGTKVIASAPGKVIYVGKGLRWYGNLIIVEHKDNYMTMYSYLKNIQVEIGDKVKQGQV
IGSAGKSSTQDKDPQMCFTIRHNGQAVDPLVHINCD

Sequences:

>Translated_196_residues
MCRIALFFILSAILISCGLQKPAPVLLKGEEFYGKRDLEYTREYHLIKENVDSSLRKESRKAFVDKVYNNNAQSMCKFVI
PVKGAVTSSDKICQDGIKITAQSGTKVIASAPGKVIYVGKGLRWYGNLIIVEHKDNYMTMYSYLKNIQVEIGDKVKQGQV
IGSAGKSSTQDKDPQMCFTIRHNGQAVDPLVHINCD
>Mature_196_residues
MCRIALFFILSAILISCGLQKPAPVLLKGEEFYGKRDLEYTREYHLIKENVDSSLRKESRKAFVDKVYNNNAQSMCKFVI
PVKGAVTSSDKICQDGIKITAQSGTKVIASAPGKVIYVGKGLRWYGNLIIVEHKDNYMTMYSYLKNIQVEIGDKVKQGQV
IGSAGKSSTQDKDPQMCFTIRHNGQAVDPLVHINCD

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=98, Percent_Identity=41.8367346938776, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789099, Length=118, Percent_Identity=38.9830508474576, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87082297, Length=94, Percent_Identity=40.4255319148936, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 21885; Mature: 21885

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCRIALFFILSAILISCGLQKPAPVLLKGEEFYGKRDLEYTREYHLIKENVDSSLRKESR
CHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KAFVDKVYNNNAQSMCKFVIPVKGAVTSSDKICQDGIKITAQSGTKVIASAPGKVIYVGK
HHHHHHHHCCCHHHHEEEEEECCCCCCCCCHHHHCCEEEEECCCCEEEEECCCCEEEEEC
GLRWYGNLIIVEHKDNYMTMYSYLKNIQVEIGDKVKQGQVIGSAGKSSTQDKDPQMCFTI
CCEEECCEEEEEECCCCHHHHHHHHHCEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEE
RHNGQAVDPLVHINCD
ECCCCEECCEEEEECC
>Mature Secondary Structure
MCRIALFFILSAILISCGLQKPAPVLLKGEEFYGKRDLEYTREYHLIKENVDSSLRKESR
CHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KAFVDKVYNNNAQSMCKFVIPVKGAVTSSDKICQDGIKITAQSGTKVIASAPGKVIYVGK
HHHHHHHHCCCHHHHEEEEEECCCCCCCCCHHHHCCEEEEECCCCEEEEECCCCEEEEEC
GLRWYGNLIIVEHKDNYMTMYSYLKNIQVEIGDKVKQGQVIGSAGKSSTQDKDPQMCFTI
CCEEECCEEEEEECCCCHHHHHHHHHCEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEE
RHNGQAVDPLVHINCD
ECCCCEECCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]