Click here to switch to the map view.

The map label for this gene is 18978396

Identifier: 18978396

GI number: 18978396

Start: 1870412

End: 1871665

Strand: Direct

Name: 18978396

Synonym: PF2024

Alternate gene names: NA

Gene position: 1870412-1871665 (Clockwise)

Preceding gene: 18978395

Following gene: 18978398

Centisome position: 98.02

GC content: 43.94

Gene sequence:

>1254_bases
ATGGGTAAAATTGTCTTAACATACAGAATGCCCCACAACTGGAACATTAATCCCTTCCTCAAGGAATACCAGAGACTCCT
CCAGAGGGCAATTGACGAAATATGGGATAACACGAGTTGGAAGGAAAAGAAGGTTAAGCATAGATATTCTCTCGGAAACG
AGGAATACCGGTACTACGAGACAATCCGCCTAATCCCATATTTTCCACAATCAAACGATTTTAAGCGAGGGCTGAGGAAT
AAACTCCTCCGAGAATGGCCTTTTGCTAAGCACTACGTTGATTCTGCAATAAAGACTGCTTACTCAATCCTCAAAAGCTG
GAGGCAGAACTACCTCAAGGGGAGAAGAAAAAGAGTGAAACCAGTCGTTAAGAGGAAGTTCGTGAGGGTTAAAACAACAC
TAATGAAGGTTGAAGGCTCGAAAATCAGAATAACAATTAAACCGAGGGAAGAATACCTTGAACTGGACTTCTCAAGGGAG
TGGTTTTATGAGAGGATTAAGGATTGGAAAGTTGGCGAGTTAATAATCAGGGAGAGGGATATCTTATTAACCTTCTCAAA
GGAGGTTGAGTTCTCTGGAAGAATCAAAATCGGCATTGACAGTAACTTAACGAGCCTTGACGTTTATCACCCTGAAAAGG
GCTGGATTAGAGTGGACTTGAGCGAACTGCATAGAATTTCCGAGACTTATGATAGAATTATTGATATGCTAAAAAGCATT
CAGCGGAAAGCTCCAAAGAGGATTGGTTTATTGCTTGAGAAATACTGGACTAGGAGGAGGAACAGGATTGAGGATTACTT
GAACAAACTCGCAGTCCAGCTTTCGAGGGAGTTCCCCGATGCGATTTTCATCTTCGAGGGTTTGAACAAGTTTAAAATGC
TCCAGAATGGTTCGAGAAAGTTTAACAGGAAGCTTTCCCGTGCCACTTGGAAGAAGATTGTTGGAAAGCTTTCTTATCGT
GTTCCTATCGAGTTTGTTAATCCTGCTTATACTTCCTCCACCTGCCCGATATGTGGGAGTAAGTTAGAGTCCCGAAACGG
GCTGGTGGAGTGTTTTAACTGTGGGTTTAAGGCGGATAGGCAGTTTGTTGGTGCTTTTAATATTTTGATGCGGGGACTTG
GGGTCGCCCTGAGCGGGGTTGAGCGTGATGATTTGCCCCCCAATGAACCCAGAGGGGAGCTGAACGCGATGAGGCCCAAG
TCCGTCGTGAGGGTTGACTTGAATGGACGAAGATTTACTCACATTCACTCATAA

Upstream 100 bases:

>100_bases
ACCATAATCTCACACTTTGCTGGGAAACTCTACGGAATGCGCTCCCACAAATACAAAAAGCTCAAAGAAGGCGTAAAAAA
ACTAATCGAGGAGGTCGAGA

Downstream 100 bases:

>100_bases
AAACTCACGACGGACAGACCCCATGATATCCAATAAATCCTTTTCTCCATCCTGAGTGGTTTTCGAAAAGAATTAAAATT
TGCGTATTCATCATTATTAT

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MGKIVLTYRMPHNWNINPFLKEYQRLLQRAIDEIWDNTSWKEKKVKHRYSLGNEEYRYYETIRLIPYFPQSNDFKRGLRN
KLLREWPFAKHYVDSAIKTAYSILKSWRQNYLKGRRKRVKPVVKRKFVRVKTTLMKVEGSKIRITIKPREEYLELDFSRE
WFYERIKDWKVGELIIRERDILLTFSKEVEFSGRIKIGIDSNLTSLDVYHPEKGWIRVDLSELHRISETYDRIIDMLKSI
QRKAPKRIGLLLEKYWTRRRNRIEDYLNKLAVQLSREFPDAIFIFEGLNKFKMLQNGSRKFNRKLSRATWKKIVGKLSYR
VPIEFVNPAYTSSTCPICGSKLESRNGLVECFNCGFKADRQFVGAFNILMRGLGVALSGVERDDLPPNEPRGELNAMRPK
SVVRVDLNGRRFTHIHS

Sequences:

>Translated_417_residues
MGKIVLTYRMPHNWNINPFLKEYQRLLQRAIDEIWDNTSWKEKKVKHRYSLGNEEYRYYETIRLIPYFPQSNDFKRGLRN
KLLREWPFAKHYVDSAIKTAYSILKSWRQNYLKGRRKRVKPVVKRKFVRVKTTLMKVEGSKIRITIKPREEYLELDFSRE
WFYERIKDWKVGELIIRERDILLTFSKEVEFSGRIKIGIDSNLTSLDVYHPEKGWIRVDLSELHRISETYDRIIDMLKSI
QRKAPKRIGLLLEKYWTRRRNRIEDYLNKLAVQLSREFPDAIFIFEGLNKFKMLQNGSRKFNRKLSRATWKKIVGKLSYR
VPIEFVNPAYTSSTCPICGSKLESRNGLVECFNCGFKADRQFVGAFNILMRGLGVALSGVERDDLPPNEPRGELNAMRPK
SVVRVDLNGRRFTHIHS
>Mature_416_residues
GKIVLTYRMPHNWNINPFLKEYQRLLQRAIDEIWDNTSWKEKKVKHRYSLGNEEYRYYETIRLIPYFPQSNDFKRGLRNK
LLREWPFAKHYVDSAIKTAYSILKSWRQNYLKGRRKRVKPVVKRKFVRVKTTLMKVEGSKIRITIKPREEYLELDFSREW
FYERIKDWKVGELIIRERDILLTFSKEVEFSGRIKIGIDSNLTSLDVYHPEKGWIRVDLSELHRISETYDRIIDMLKSIQ
RKAPKRIGLLLEKYWTRRRNRIEDYLNKLAVQLSREFPDAIFIFEGLNKFKMLQNGSRKFNRKLSRATWKKIVGKLSYRV
PIEFVNPAYTSSTCPICGSKLESRNGLVECFNCGFKADRQFVGAFNILMRGLGVALSGVERDDLPPNEPRGELNAMRPKS
VVRVDLNGRRFTHIHS

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 49712; Mature: 49580

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKIVLTYRMPHNWNINPFLKEYQRLLQRAIDEIWDNTSWKEKKVKHRYSLGNEEYRYYE
CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEE
TIRLIPYFPQSNDFKRGLRNKLLREWPFAKHYVDSAIKTAYSILKSWRQNYLKGRRKRVK
EEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PVVKRKFVRVKTTLMKVEGSKIRITIKPREEYLELDFSREWFYERIKDWKVGELIIRERD
HHHHHHHHHHHHHHEEECCCEEEEEECCCHHHHCCCCCHHHHHHHHCCCCHHHHHEECCC
ILLTFSKEVEFSGRIKIGIDSNLTSLDVYHPEKGWIRVDLSELHRISETYDRIIDMLKSI
EEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH
QRKAPKRIGLLLEKYWTRRRNRIEDYLNKLAVQLSREFPDAIFIFEGLNKFKMLQNGSRK
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCHHH
FNRKLSRATWKKIVGKLSYRVPIEFVNPAYTSSTCPICGSKLESRNGLVECFNCGFKADR
HHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHCCCHHHHHHCCCHHHH
QFVGAFNILMRGLGVALSGVERDDLPPNEPRGELNAMRPKSVVRVDLNGRRFTHIHS
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECC
>Mature Secondary Structure 
GKIVLTYRMPHNWNINPFLKEYQRLLQRAIDEIWDNTSWKEKKVKHRYSLGNEEYRYYE
CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEE
TIRLIPYFPQSNDFKRGLRNKLLREWPFAKHYVDSAIKTAYSILKSWRQNYLKGRRKRVK
EEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PVVKRKFVRVKTTLMKVEGSKIRITIKPREEYLELDFSREWFYERIKDWKVGELIIRERD
HHHHHHHHHHHHHHEEECCCEEEEEECCCHHHHCCCCCHHHHHHHHCCCCHHHHHEECCC
ILLTFSKEVEFSGRIKIGIDSNLTSLDVYHPEKGWIRVDLSELHRISETYDRIIDMLKSI
EEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH
QRKAPKRIGLLLEKYWTRRRNRIEDYLNKLAVQLSREFPDAIFIFEGLNKFKMLQNGSRK
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCHHH
FNRKLSRATWKKIVGKLSYRVPIEFVNPAYTSSTCPICGSKLESRNGLVECFNCGFKADR
HHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHCCCHHHHHHCCCHHHH
QFVGAFNILMRGLGVALSGVERDDLPPNEPRGELNAMRPKSVVRVDLNGRRFTHIHS
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]