Click here to switch to the map view.

The map label for this gene is scpB [H]

Identifier: 18978393

GI number: 18978393

Start: 1868394

End: 1868960

Strand: Reverse

Name: scpB [H]

Synonym: PF2021

Alternate gene names: 18978393

Gene position: 1868960-1868394 (Counterclockwise)

Preceding gene: 18978394

Following gene: 18978392

Centisome position: 97.94

GC content: 39.86

Gene sequence:

>567_bases
ATGGGACTAATAGAGGATAAAGCCTTAGTTGAAGCTGCTCTCTTCGTAGCAGGAAGACCTTTGAGCTTAAAAGAGCTTTC
AAAAGCACTGGGAATAAAATCTCTAGACTATCTGGAGAAGTTGATTGAGCTGATAGCAAGTGAGTATGCGGAGAGGAAAA
GTGCAATTGAAATAGTAAAGGTTGCTGGGGATAAGTGGGTTATGCAAGTAAAGCAGGAATACTCCCAAAGGGTAATTCCA
TTAATGCCTAAGCCAGAGCTGAGCACAGGAGAACTCAAAACTTTAGCCTTGATAGCTTACCTCCAACCAGTGGAACAGAG
CAAGATAGTAAAGCTTAGGGGGAGTCAAGCATACGAGCACATTAGGAAGCTTTTGGAGATGGGTCTTATATATGCTGAGC
CTTATGAGAGAACAAGACTTCTTGGAACTACTGAAAAATTTGCGGAGCTTTATGGCTTTCCAGAAAATGATCCAATGTTA
ATAAAGGAGACATTCAAGAAAGTAATTCATGCTGAGTATTCTGATTTGATGAAAAAGATAGAGGAAAGTGAAAAGAAAAA
GGAATGA

Upstream 100 bases:

>100_bases
GAGTATGCTTACCTAAGGATGAAGTTGAAGGCAGAACACCTTAATGTAGGAAAGGAAATAGTCATAAAATGAGATGGCCT
AAATAATGTGGGCGAGAAGC

Downstream 100 bases:

>100_bases
CCTTCCAAAGGCTTAAATATTCTCCAAAGAAATTACTATTTAGGTGAATGATCATGAGTGCATTTACAAAAGAAGAAATA
ATCAAGAGGATCCTGGAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MGLIEDKALVEAALFVAGRPLSLKELSKALGIKSLDYLEKLIELIASEYAERKSAIEIVKVAGDKWVMQVKQEYSQRVIP
LMPKPELSTGELKTLALIAYLQPVEQSKIVKLRGSQAYEHIRKLLEMGLIYAEPYERTRLLGTTEKFAELYGFPENDPML
IKETFKKVIHAEYSDLMKKIEESEKKKE

Sequences:

>Translated_188_residues
MGLIEDKALVEAALFVAGRPLSLKELSKALGIKSLDYLEKLIELIASEYAERKSAIEIVKVAGDKWVMQVKQEYSQRVIP
LMPKPELSTGELKTLALIAYLQPVEQSKIVKLRGSQAYEHIRKLLEMGLIYAEPYERTRLLGTTEKFAELYGFPENDPML
IKETFKKVIHAEYSDLMKKIEESEKKKE
>Mature_187_residues
GLIEDKALVEAALFVAGRPLSLKELSKALGIKSLDYLEKLIELIASEYAERKSAIEIVKVAGDKWVMQVKQEYSQRVIPL
MPKPELSTGELKTLALIAYLQPVEQSKIVKLRGSQAYEHIRKLLEMGLIYAEPYERTRLLGTTEKFAELYGFPENDPMLI
KETFKKVIHAEYSDLMKKIEESEKKKE

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 21490; Mature: 21358

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLIEDKALVEAALFVAGRPLSLKELSKALGIKSLDYLEKLIELIASEYAERKSAIEIVK
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAGDKWVMQVKQEYSQRVIPLMPKPELSTGELKTLALIAYLQPVEQSKIVKLRGSQAYEH
HHCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHCCHHHHHH
IRKLLEMGLIYAEPYERTRLLGTTEKFAELYGFPENDPMLIKETFKKVIHAEYSDLMKKI
HHHHHHHCCHHCCCHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
EESEKKKE
HHHHHCCC
>Mature Secondary Structure 
GLIEDKALVEAALFVAGRPLSLKELSKALGIKSLDYLEKLIELIASEYAERKSAIEIVK
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAGDKWVMQVKQEYSQRVIPLMPKPELSTGELKTLALIAYLQPVEQSKIVKLRGSQAYEH
HHCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHCCHHHHHH
IRKLLEMGLIYAEPYERTRLLGTTEKFAELYGFPENDPMLIKETFKKVIHAEYSDLMKKI
HHHHHHHCCHHCCCHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
EESEKKKE
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA